Factsheet for GSMUA_Achr4P12750_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P05360_001
GSMUA_Achr3P27750_001
GSMUA_Achr4P05720_001
GSMUA_Achr4P12470_001
GSMUA_Achr4P25000_001
GSMUA_Achr5P12940_001
GSMUA_Achr5P21990_001
GSMUA_Achr5P22630_001
GSMUA_Achr6P36010_001
GSMUA_Achr8P23820_001
GSMUA_Achr9P13950_001
GSMUA_Achr9P14160_001
GSMUA_Achr9P23140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	GSMUA_Achr10P...	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr10P...	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr3P05360_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr3P27750_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P05720_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P12470_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr5P21990_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr5P22630_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr6P36010_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr8P23820_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr9P14160_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr9P23140_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P25000_001	AT5G35620.1	21798944
AT2G24050.1	GSMUA_Achr5P12940_001	AT5G35620.1	21798944
AT5G57870.1	GSMUA_Achr9P13950_001	AT1G72730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06000_001	Banana	cytosol	2.84	80.49
GSMUA_Achr9P22750_001	Banana	plastid	50.0	77.96
GSMUA_Achr4P05990_001	Banana	cytosol	8.79	69.39
GSMUA_AchrUn_...	Banana	cytosol	44.31	68.9
VIT_11s0037g00490.t01	Wine grape	plastid	44.14	64.48
Solyc07g005810.2.1	Tomato	plastid	42.16	63.26
PGSC0003DMT400029102	Potato	cytosol, plastid	41.98	62.44
KRH63081	Soybean	endoplasmic reticulum	41.64	62.4
KRH55033	Soybean	endoplasmic reticulum	41.55	62.19
Zm00001d025777_P007	Maize	plastid	41.72	61.66
KRH72326	Soybean	endoplasmic reticulum	41.64	61.61
KRH03030	Soybean	endoplasmic reticulum	41.81	61.47
EES12452	Sorghum	cytosol	41.9	61.44
Zm00001d003147_P001	Maize	plastid	41.55	61.32
PGSC0003DMT400020464	Potato	cytosol	40.86	61.32
Solyc12g009960.1.1	Tomato	nucleus	40.78	61.19
HORVU2Hr1G086240.1	Barley	cytosol	39.14	60.29
Os02t0611500-01	Rice	cytosol	40.17	59.74
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	40.26	59.26
TraesCS2A01G354900.1	Wheat	cytosol	40.26	59.11
TraesCS2B01G373600.1	Wheat	cytosol	40.17	59.06
CDY69274	Canola	cytosol, mitochondrion	16.55	58.72
Os04t0499300-01	Rice	plastid	40.78	58.68
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	44.05	57.87
CDY28203	Canola	cytosol	25.34	57.53
AT5G57870.1	Thale cress	plastid	38.62	57.44
CDY28211	Canola	mitochondrion	23.28	57.2
CDY39236	Canola	cytosol	36.29	56.97
Bra020407.1-P	Field mustard	plastid	37.76	56.88
CDY32742	Canola	plastid	37.76	56.88
Bra024051.1-P	Field mustard	cytosol	36.47	56.55
CDY02774	Canola	plastid	37.33	56.09
Bra011218.1-P	Field mustard	plastid	26.29	55.76
CDX68687	Canola	plastid	35.43	54.95
CDX72262	Canola	cytosol	35.26	54.83
Bra011211.1-P	Field mustard	plastid	35.17	54.47
GSMUA_Achr4P05970_001	Banana	cytosol	7.07	54.3
AT2G24050.1	Thale cress	plastid	34.05	52.88
GSMUA_Achr3P28040_001	Banana	cytosol	20.0	51.44
AT1G62410.1	Thale cress	cytosol	8.79	45.74
AT4G30680.1	Thale cress	mitochondrion, plastid	10.17	44.87
Solyc07g005780.1.1	Tomato	cytosol	16.72	43.11
HORVU6Hr1G023180.1	Barley	cytosol	10.26	40.34
GSMUA_Achr11P...	Banana	cytosol	10.26	35.95
GSMUA_Achr2P18290_001	Banana	cytosol	13.71	24.16
Os06t0520600-01	Rice	extracellular	13.79	22.5
GSMUA_Achr11P...	Banana	nucleus	15.43	11.14
GSMUA_Achr11P...	Banana	nucleus	15.34	10.75
GSMUA_Achr8P14940_001	Banana	plastid	15.69	9.36
GSMUA_Achr2P18280_001	Banana	nucleus	7.84	8.89

Protein Annotations

Gene3D:1.25.40.180	MapMan:13.3.5.5.6	MapMan:13.3.6.2.3	MapMan:17.4.2.4.2	InterPro:ARM-type_fold	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G12750_001
EnsemblPlants:GSMUA_Achr4P12750_001	EnsemblPlants:GSMUA_Achr4T12750_001	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	UniProt:M0SNE0
InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253
PANTHER:PTHR23253:SF32	SMART:SM00543	SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI0002968641	SEG:seg

Description

Eukaryotic initiation factor iso-4F subunit p82-34 [Source:GMGC_GENE;Acc:GSMUA_Achr4G12750_001]

Coordinates

chr4:-:9445432..9457798

Molecular Weight (calculated)

129403.0 Da

IEP (calculated)

7.656

GRAVY (calculated)

-0.358

Length

1160 amino acids

Sequence
(BLAST)

0001: MQSDRTEISL RPGGGNRGGR ILGPRFDSAA SAGGASDLPA LRPHGGAGTA LPFKIGDSRF ESREHIRYTR DQLLQVREAV QTPEDIVKIK QEIEAELFPE
0101: DQTWGRSDSN LASQSQSRYF EPDGRDWRGR SGQPTSFGNE RSWDSIHDNK ESNISISGYQ EIKQSNKQGS QFPSSTQVSS TQVGPTPALI KAEVPWSARR
0201: GNLTDKDRVL KTVKGILNKL TPEKFDILKG QLIDAGITTP DILKDVITLI FDKAVFEPTF CPMYAQLCSD LNEKLPVFPP EQEGEKEITF KRVLLNNCQE
0301: AFEGADNLEA EVRKLTAPDQ EMERRDKERM VKLRTLGNIR LIGELLKQKM VPEKIVHHIA QKLLGHDGKT CPAEENVEAI CQLFNTIGKQ LDESPKSRRF
0401: NDVYFSRLKE LTSNPQLAPR LRFMVRNVLD LRSNNWVPRR EEVKAKTISE IHSEAEKNLG LRPGATASMR NSRDGGSLGG LSPTGFPNNR PGTGGMMPGM
0501: PGARKMPGMS GLDGDFWEVP RSKSMPRGEA NRAHSSLVAK SPAINPKLLP QGSGSLIAGR TSALLQGSGP PSRSTLATGM GDSPSQNLVP LRPAAQMPPP
0601: AIPEKLVAKP KFNPNELHKK TVALLEEYFH IRILDEALQC VEELKSPEYH PEVVKEAINI ALDKGVSCLE PLVNLLEYLL VKKVFTPRDL GTGCLLYGAM
0701: LDDISIDLPK APTYFGEVVG KLVLIGGVDF KVVEEILKKV EEASFQSAVF DAVMRVIKSG PNGEAVGRLP HVPLLDSSRT LFYRHYLRLL LAMPPTPSVR
0801: CDSPSFKISL ALALIRFNKI HRPSPSSSSD AQRWKRKAKD RKLEILRLRE ELKQLEDGRT CEADLPIASC RCHFFDGIGE LGGDGSGRGD GGHWIDEVLR
0901: RRFLRLVRWK ERRKKVDRPL NQKHFLSFGS ENEIEQLGTS VDFLVEFTDN ILGEIGPSFA TFSHQAIDFI LASLKNLLSS QKDIELIEDI VNGLIMRLIR
1001: RMCAIPENDV SGSVNSDSDP QFCVQHLIRK LGNEPFVGQR ILLSVSQKTS VVIDSLLLMD PFDDSFPCLH GNMFMMIELM EFLISDYVRS WISIEDFDAR
1101: LLEEWVRSVI QARKVSELLE SRNGLYMLYM ERVVGELAKI LSPLASQGKL DVDILSYMCC

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.