Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr1P21300_001 | |
| GSMUA_Achr8P18250_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P14160_001 | Banana | nucleus | 64.68 | 71.18 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 58.33 | 63.36 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 63.1 | 60.34 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 48.61 | 53.96 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 46.03 | 52.97 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 44.44 | 51.73 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 35.71 | 51.43 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 34.33 | 50.0 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 45.83 | 49.25 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 39.48 | 47.84 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 40.67 | 44.09 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 41.67 | 44.03 |
| GSMUA_Achr10P... | Banana | nucleus | 42.46 | 43.94 |
| KRG97402 | Soybean | nucleus | 34.33 | 39.95 |
| Bra033671.1-P | Field mustard | nucleus | 28.17 | 39.23 |
| KRH31506 | Soybean | nucleus | 33.73 | 38.37 |
| Solyc05g015510.2.1 | Tomato | nucleus | 35.12 | 38.23 |
| CDY43604 | Canola | nucleus | 29.17 | 38.18 |
| Solyc04g045560.2.1 | Tomato | nucleus | 26.39 | 38.0 |
| PGSC0003DMT400084734 | Potato | nucleus | 34.92 | 37.85 |
| Bra027478.1-P | Field mustard | nucleus | 28.97 | 37.44 |
| CDY32959 | Canola | nucleus | 28.97 | 37.44 |
| AT5G43270.1 | Thale cress | nucleus | 30.75 | 36.99 |
| PGSC0003DMT400068752 | Potato | nucleus | 28.17 | 36.88 |
| CDY03913 | Canola | nucleus | 26.19 | 35.58 |
| CDY15712 | Canola | nucleus | 26.19 | 35.29 |
| GSMUA_Achr6P27520_001 | Banana | plastid | 10.71 | 35.29 |
| CDX84928 | Canola | nucleus | 25.4 | 35.16 |
| CDY27611 | Canola | nucleus | 25.4 | 35.07 |
| Bra030041.1-P | Field mustard | nucleus | 25.99 | 35.03 |
| Bra030040.1-P | Field mustard | nucleus | 26.98 | 34.87 |
| Bra032822.1-P | Field mustard | nucleus | 25.2 | 34.79 |
| CDY03914 | Canola | nucleus | 25.6 | 34.68 |
| CDY15713 | Canola | nucleus | 26.79 | 34.62 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 19.44 | 34.39 |
| CDY27612 | Canola | nucleus | 22.02 | 33.74 |
| CDY11816 | Canola | nucleus | 24.4 | 33.7 |
| GSMUA_Achr1P08440_001 | Banana | nucleus | 12.5 | 33.69 |
| Bra032823.1-P | Field mustard | nucleus | 21.83 | 33.54 |
| CDY67700 | Canola | nucleus | 23.02 | 33.53 |
| CDX84927 | Canola | nucleus | 24.4 | 33.52 |
| GSMUA_Achr4P23650_001 | Banana | nucleus | 12.3 | 33.16 |
| AT1G27370.1 | Thale cress | nucleus | 25.79 | 32.83 |
| AT1G27360.1 | Thale cress | nucleus | 25.6 | 32.82 |
| Bra010949.1-P | Field mustard | nucleus | 23.61 | 32.51 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 16.07 | 31.76 |
| CDY22356 | Canola | nucleus | 31.75 | 30.83 |
| CDY47812 | Canola | nucleus | 31.55 | 30.81 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 15.67 | 29.04 |
| GSMUA_Achr2P03070_001 | Banana | nucleus | 12.3 | 28.84 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 15.28 | 28.1 |
| GSMUA_Achr10P... | Banana | nucleus | 12.5 | 27.63 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 18.65 | 27.33 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 18.45 | 27.27 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 16.47 | 26.02 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 18.85 | 25.75 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 17.66 | 25.72 |
| GSMUA_Achr2P11940_001 | Banana | nucleus | 16.07 | 25.47 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 17.06 | 25.07 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 17.66 | 24.93 |
| GSMUA_Achr5P13440_001 | Banana | mitochondrion, nucleus | 14.29 | 24.74 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.25 | 24.73 |
| GSMUA_Achr2P06150_001 | Banana | nucleus | 18.65 | 23.92 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 16.67 | 23.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.47 | 23.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.27 | 23.43 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 17.86 | 23.2 |
| GSMUA_Achr4P26940_001 | Banana | nucleus | 15.87 | 23.05 |
| GSMUA_Achr4P24610_001 | Banana | nucleus | 14.88 | 22.87 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 16.27 | 22.78 |
| GSMUA_Achr6P06030_001 | Banana | nucleus | 16.07 | 21.95 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 17.86 | 21.9 |
| GSMUA_Achr9P01380_001 | Banana | nucleus | 16.07 | 21.72 |
| GSMUA_Achr11P... | Banana | nucleus | 17.66 | 21.45 |
| GSMUA_Achr9P29330_001 | Banana | nucleus | 15.87 | 20.94 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 17.06 | 20.82 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 9.92 | 20.33 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr10G02970_001 |
| EnsemblPlants:GSMUA_Achr10P02970_001 | EnsemblPlants:GSMUA_Achr10T02970_001 | InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M0REX4 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF24 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI000295573F | SEG:seg | : | : | : | : |
Description
Putative Squamosa promoter-binding-like protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr10G02970_001]
Coordinates
chr10:-:9936736..9945205
Molecular Weight (calculated)
55550.3 Da
IEP (calculated)
8.667
GRAVY (calculated)
-0.479
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVFNQEHNP IASSPVICLI SFESRISECM RSVNNNTSNL ATSASLMDWV PKTPFPWYWE TLELFSGKES EISKAAQVPD LKIDGGAFIC NRSVCSSGRG
101: ASSVLELGNR SSKSSISASV DSLSGAGKRK SQLNFDSAGR APHNLDNNII ARVEDSGTST VPVVADHPKE PLTGLKLGPT YFEDVASVNN IKNLSSSATM
201: TSSAALAKKS RVSQQNLQSP YCQVEGCNID LTTAKDYHRK HRVCESHSKS PKVIVAGKER RFCQQCSRFH DLSEFDQKKR SCRRRLSDHN ARRRKPQPTA
301: ISFNSSRLSS SYYDDRHQMN LVFGRAPLGH VTTTVSFPRN NLGSFKLLQA KESWTKSNKA GCTDGQLQFS SICQPNNAST LNHDLDRLLS FKGTAAEVLN
401: QDLEASAFAS NTNITPDLRR ALSLLSNDSW LAGPSSMKFV NTQNASTTQP AVNMADSTAG ILQDEQPLEH LMMLPVHLQI GEFQEFQLLK APFQTSFFDS
501: TRIH
101: ASSVLELGNR SSKSSISASV DSLSGAGKRK SQLNFDSAGR APHNLDNNII ARVEDSGTST VPVVADHPKE PLTGLKLGPT YFEDVASVNN IKNLSSSATM
201: TSSAALAKKS RVSQQNLQSP YCQVEGCNID LTTAKDYHRK HRVCESHSKS PKVIVAGKER RFCQQCSRFH DLSEFDQKKR SCRRRLSDHN ARRRKPQPTA
301: ISFNSSRLSS SYYDDRHQMN LVFGRAPLGH VTTTVSFPRN NLGSFKLLQA KESWTKSNKA GCTDGQLQFS SICQPNNAST LNHDLDRLLS FKGTAAEVLN
401: QDLEASAFAS NTNITPDLRR ALSLLSNDSW LAGPSSMKFV NTQNASTTQP AVNMADSTAG ILQDEQPLEH LMMLPVHLQI GEFQEFQLLK APFQTSFFDS
501: TRIH
001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
Arabidopsis Description
SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.