Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr1P21300_001 | |
| GSMUA_Achr8P18250_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P14160_001 | Banana | nucleus | 67.89 | 68.78 |
| GSMUA_Achr10P... | Banana | nucleus | 63.36 | 58.33 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 50.65 | 51.76 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 56.9 | 50.09 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 36.85 | 49.42 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 36.85 | 48.86 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 45.26 | 47.95 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 44.61 | 47.81 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 41.81 | 46.63 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 45.26 | 44.78 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 43.53 | 43.44 |
| GSMUA_Achr10P... | Banana | nucleus | 44.4 | 42.3 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 41.81 | 40.67 |
| Bra033671.1-P | Field mustard | nucleus | 29.96 | 38.4 |
| Solyc05g015510.2.1 | Tomato | nucleus | 37.93 | 38.01 |
| PGSC0003DMT400084734 | Potato | nucleus | 37.28 | 37.2 |
| KRG97402 | Soybean | nucleus | 34.27 | 36.72 |
| PGSC0003DMT400068752 | Potato | nucleus | 30.39 | 36.62 |
| GSMUA_Achr6P27520_001 | Banana | plastid | 12.07 | 36.6 |
| KRH31506 | Soybean | nucleus | 34.48 | 36.12 |
| Bra027478.1-P | Field mustard | nucleus | 30.17 | 35.9 |
| CDY32959 | Canola | nucleus | 30.17 | 35.9 |
| Solyc04g045560.2.1 | Tomato | nucleus | 26.94 | 35.71 |
| CDY43604 | Canola | nucleus | 29.53 | 35.58 |
| CDY03913 | Canola | nucleus | 28.45 | 35.58 |
| GSMUA_Achr4P23650_001 | Banana | nucleus | 14.01 | 34.76 |
| CDY27612 | Canola | nucleus | 24.57 | 34.65 |
| Bra032823.1-P | Field mustard | nucleus | 24.35 | 34.45 |
| AT5G43270.1 | Thale cress | nucleus | 31.03 | 34.37 |
| CDY15713 | Canola | nucleus | 28.88 | 34.36 |
| CDY27611 | Canola | nucleus | 26.94 | 34.25 |
| GSMUA_Achr1P08440_001 | Banana | nucleus | 13.79 | 34.22 |
| Bra030040.1-P | Field mustard | nucleus | 28.66 | 34.1 |
| CDX84928 | Canola | nucleus | 26.72 | 34.07 |
| CDY15712 | Canola | nucleus | 27.37 | 33.96 |
| AT1G27370.1 | Thale cress | nucleus | 28.88 | 33.84 |
| Bra032822.1-P | Field mustard | nucleus | 26.51 | 33.7 |
| Bra030041.1-P | Field mustard | nucleus | 27.16 | 33.69 |
| CDY67700 | Canola | nucleus | 25.0 | 33.53 |
| CDX84927 | Canola | nucleus | 26.51 | 33.52 |
| CDY11816 | Canola | nucleus | 26.29 | 33.42 |
| CDY03914 | Canola | nucleus | 26.72 | 33.33 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 19.83 | 32.28 |
| Bra010949.1-P | Field mustard | nucleus | 25.22 | 31.97 |
| AT1G27360.1 | Thale cress | nucleus | 26.72 | 31.55 |
| CDY22356 | Canola | nucleus | 32.97 | 29.48 |
| CDY47812 | Canola | nucleus | 32.54 | 29.26 |
| GSMUA_Achr2P03070_001 | Banana | nucleus | 13.36 | 28.84 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 20.91 | 28.2 |
| GSMUA_Achr10P... | Banana | nucleus | 13.58 | 27.63 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 20.26 | 27.57 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 15.09 | 27.45 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 19.83 | 26.59 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 15.09 | 25.74 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 17.67 | 25.71 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 18.97 | 25.66 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 20.26 | 25.47 |
| GSMUA_Achr2P11940_001 | Banana | nucleus | 17.46 | 25.47 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 19.18 | 24.93 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 14.66 | 24.82 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 13.15 | 24.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.75 | 24.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.4 | 24.19 |
| GSMUA_Achr5P13440_001 | Banana | mitochondrion, nucleus | 14.66 | 23.37 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 19.4 | 23.2 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.46 | 23.14 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 17.89 | 23.06 |
| GSMUA_Achr2P06150_001 | Banana | nucleus | 19.4 | 22.9 |
| GSMUA_Achr4P24610_001 | Banana | nucleus | 15.95 | 22.56 |
| GSMUA_Achr9P01380_001 | Banana | nucleus | 18.1 | 22.52 |
| GSMUA_Achr6P06030_001 | Banana | nucleus | 17.89 | 22.49 |
| GSMUA_Achr4P26940_001 | Banana | nucleus | 16.16 | 21.61 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 19.18 | 21.55 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 18.97 | 21.41 |
| GSMUA_Achr9P29330_001 | Banana | nucleus | 17.46 | 21.2 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 15.95 | 20.9 |
| GSMUA_Achr11P... | Banana | nucleus | 17.89 | 20.0 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr3G05360_001 |
| EnsemblPlants:GSMUA_Achr3P05360_001 | EnsemblPlants:GSMUA_Achr3T05360_001 | InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M0SC04 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF30 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI0002964B95 | SEG:seg | : | : | : | : |
Description
Putative Squamosa promoter-binding-like protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr3G05360_001]
Coordinates
chr3:+:3541596..3547414
Molecular Weight (calculated)
50697.5 Da
IEP (calculated)
9.193
GRAVY (calculated)
-0.581
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWVAKTPFQ WDWETLELFS EKEKEICKSA QEPLLKSQGS MGICNGSVCS SHGEASSALE LGNSSSKIFV SSSVDSSPKT EQRNLEFNFN SAEATTHSSN
101: KIIFARVGGS GTSPVPLAAG RPKEPLTRLK LGHTYFEEGG AKNNVKSSSS LPPLASSAVV AKKPRVSQQS SQSPYCQVEG CNIDLTIAKD YHRKHRICES
201: HSKSPKVIVA GQERRFCQQC SRFHHLSEFD QTKRSCRRRL SDHNARRRKP PPATISFNSS RISSSFYDDR HQMNLDFGPT PLGHMTTTVS FPWDGPSNFK
301: LVQPNSWTKS NKVAGINGQL QFSKSCQTHN ISTLRHVNMD GLLPTKGTTV DVLNEALESS AFASNLDGAP GLGCALSLLS NDPCGSANPG PTSHIKLAKA
401: KNAVAIRPAA SPIDLATRFL QDDQSPSQSM MLPFNPQNGN GGQFQEFQLH KAPYQASFDS TRIH
101: KIIFARVGGS GTSPVPLAAG RPKEPLTRLK LGHTYFEEGG AKNNVKSSSS LPPLASSAVV AKKPRVSQQS SQSPYCQVEG CNIDLTIAKD YHRKHRICES
201: HSKSPKVIVA GQERRFCQQC SRFHHLSEFD QTKRSCRRRL SDHNARRRKP PPATISFNSS RISSSFYDDR HQMNLDFGPT PLGHMTTTVS FPWDGPSNFK
301: LVQPNSWTKS NKVAGINGQL QFSKSCQTHN ISTLRHVNMD GLLPTKGTTV DVLNEALESS AFASNLDGAP GLGCALSLLS NDPCGSANPG PTSHIKLAKA
401: KNAVAIRPAA SPIDLATRFL QDDQSPSQSM MLPFNPQNGN GGQFQEFQLH KAPYQASFDS TRIH
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
Arabidopsis Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.