Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15712 | Canola | nucleus | 94.89 | 94.39 |
| CDY67700 | Canola | nucleus | 70.97 | 76.3 |
| CDX84927 | Canola | nucleus | 72.31 | 73.3 |
| CDY11816 | Canola | nucleus | 71.24 | 72.6 |
| CDY27612 | Canola | nucleus | 63.71 | 72.04 |
| CDY15713 | Canola | nucleus | 72.04 | 68.72 |
| CDY03913 | Canola | nucleus | 68.28 | 68.46 |
| CDY27611 | Canola | nucleus | 64.52 | 65.75 |
| AT1G27360.1 | Thale cress | nucleus | 69.35 | 65.65 |
| CDX84928 | Canola | nucleus | 62.9 | 64.29 |
| Os02t0139400-01 | Rice | nucleus | 29.03 | 38.3 |
| CDY17204 | Canola | nucleus | 13.17 | 34.51 |
| CDY27935 | Canola | nucleus | 13.44 | 34.01 |
| CDY32959 | Canola | nucleus | 35.22 | 33.59 |
| CDY43604 | Canola | nucleus | 34.14 | 32.99 |
| Os02t0174100-02 | Rice | nucleus | 22.04 | 32.67 |
| KRG97402 | Soybean | nucleus | 37.9 | 32.56 |
| KRH31506 | Soybean | nucleus | 38.17 | 32.05 |
| CDY37684 | Canola | nucleus | 12.1 | 31.91 |
| CDY57212 | Canola | nucleus | 12.1 | 31.91 |
| CDY50515 | Canola | nucleus | 13.17 | 31.21 |
| CDY24113 | Canola | nucleus | 13.17 | 30.43 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 32.26 | 28.85 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 35.22 | 28.6 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 26.34 | 28.32 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 34.41 | 28.19 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 24.73 | 28.05 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 24.46 | 28.0 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 34.95 | 27.96 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 32.8 | 27.85 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 24.46 | 27.83 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 26.08 | 27.71 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 24.19 | 27.61 |
| Zm00001d053775_P001 | Maize | nucleus | 24.46 | 27.49 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 31.99 | 27.48 |
| Zm00001d015410_P002 | Maize | nucleus | 24.46 | 27.41 |
| CDY25876 | Canola | nucleus | 12.9 | 27.27 |
| EES04609 | Sorghum | nucleus | 24.46 | 27.0 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 33.87 | 26.87 |
| CDY61210 | Canola | nucleus | 12.9 | 26.82 |
| CDX97645 | Canola | nucleus | 12.9 | 26.82 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 33.33 | 26.72 |
| CDY32310 | Canola | nucleus | 12.63 | 26.7 |
| CDY20128 | Canola | nucleus | 12.63 | 26.7 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 33.87 | 26.64 |
| CDY47812 | Canola | nucleus | 36.83 | 26.55 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 33.6 | 26.43 |
| Os06t0703500-02 | Rice | nucleus | 33.33 | 26.11 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 33.33 | 26.11 |
| CDY22356 | Canola | nucleus | 36.29 | 26.01 |
| OQU77017 | Sorghum | nucleus | 30.65 | 25.91 |
| Zm00001d014698_P001 | Maize | nucleus | 30.38 | 25.74 |
| CDX98540 | Canola | nucleus | 12.37 | 25.7 |
| CDX79544 | Canola | nucleus | 12.9 | 25.67 |
| GSMUA_Achr10P... | Banana | nucleus | 34.68 | 25.6 |
| EES04495 | Sorghum | nucleus | 32.53 | 25.21 |
| Os06t0663500-00 | Rice | nucleus | 23.12 | 25.07 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 33.6 | 24.65 |
| GSMUA_Achr10P... | Banana | nucleus | 32.26 | 24.64 |
| CDX95958 | Canola | nucleus | 19.09 | 23.75 |
| Zm00001d053890_P003 | Maize | nucleus | 30.38 | 23.44 |
| CDX81606 | Canola | nucleus | 20.16 | 22.52 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 31.99 | 22.41 |
| CDY45826 | Canola | nucleus | 20.43 | 22.29 |
| CDY69014 | Canola | nucleus | 19.09 | 22.26 |
| CDY50300 | Canola | nucleus | 19.62 | 22.26 |
| CDX96251 | Canola | nucleus | 19.62 | 22.26 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 31.45 | 22.2 |
| CDY61750 | Canola | nucleus | 18.01 | 21.75 |
| CDX84872 | Canola | nucleus | 19.89 | 21.7 |
| CDX98259 | Canola | nucleus | 18.82 | 21.54 |
| CDX90071 | Canola | nucleus | 18.01 | 21.47 |
| CDY15132 | Canola | nucleus | 13.44 | 21.46 |
| CDY34028 | Canola | nucleus | 19.89 | 21.26 |
| CDY06881 | Canola | nucleus | 20.7 | 21.21 |
| CDX79888 | Canola | nucleus | 20.97 | 21.2 |
| CDX71667 | Canola | nucleus | 20.43 | 21.17 |
| CDY53504 | Canola | nucleus | 20.7 | 20.81 |
| CDY14818 | Canola | nucleus | 20.43 | 20.71 |
| CDY47656 | Canola | nucleus | 18.01 | 20.68 |
| CDY38043 | Canola | nucleus | 18.01 | 20.0 |
| CDX67715 | Canola | nucleus | 16.67 | 19.62 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.54 | 3.45 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078ETI1 | EnsemblPlants:CDY03914 | ProteinID:CDY03914 | ProteinID:CDY03914.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00117407001 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI0004EDFEEB | SEG:seg | : | : | : | : |
Description
BnaC07g11390D
Coordinates
chrLK031947:-:777851..780586
Molecular Weight (calculated)
41536.3 Da
IEP (calculated)
8.114
GRAVY (calculated)
-0.754
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCNMVSPLW DWEHLITPNL SKTENDKKQP STTDWDIEKG EGIESIFPSF AGSSTTGFLS SQLTSTNSSS PKLKSSLGDF DQVKASTALQ VASTESDLCL
101: KLGKRSYSDE ETWGRNNSND ISAVSVKLLT PPYVVAQKKS KSSCGQSMQV PRCQIDGCEL DLSSAKDYHR KHRVCQSHSK CPVVTVGGME RRFCQQCSRL
201: HAVSEFDEKK RSCRKRLSHH NARRRKPQGM FPLNPERVYN GRQHTNMLWN ELSLNTRSEE KYAWGTTYET KPTQMESGFT LNFQRGSGAD AEEQQVFASS
301: NLSFSAYQTS AGKSNFQLPS KGVGEYSGGL YETQDFYSAL SLLSTSSDSH GTKHHPMVES QSIHGTFPTH FI
101: KLGKRSYSDE ETWGRNNSND ISAVSVKLLT PPYVVAQKKS KSSCGQSMQV PRCQIDGCEL DLSSAKDYHR KHRVCQSHSK CPVVTVGGME RRFCQQCSRL
201: HAVSEFDEKK RSCRKRLSHH NARRRKPQGM FPLNPERVYN GRQHTNMLWN ELSLNTRSEE KYAWGTTYET KPTQMESGFT LNFQRGSGAD AEEQQVFASS
301: NLSFSAYQTS AGKSNFQLPS KGVGEYSGGL YETQDFYSAL SLLSTSSDSH GTKHHPMVES QSIHGTFPTH FI
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
Arabidopsis Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.