Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005470.1-P | Field mustard | nucleus | 96.48 | 96.48 |
| CDY27935 | Canola | nucleus | 93.66 | 90.48 |
| AT2G33810.1 | Thale cress | nucleus | 76.06 | 82.44 |
| CDY57212 | Canola | nucleus | 73.24 | 73.76 |
| CDY37684 | Canola | nucleus | 73.24 | 73.76 |
| Solyc10g009080.2.1 | Tomato | nucleus | 56.34 | 59.26 |
| PGSC0003DMT400058753 | Potato | nucleus | 55.63 | 58.52 |
| CDX79544 | Canola | nucleus | 76.06 | 57.75 |
| VIT_10s0003g00050.t01 | Wine grape | nucleus | 54.93 | 55.71 |
| PGSC0003DMT400076399 | Potato | nucleus | 52.82 | 55.15 |
| Solyc02g077920.2.1 | Tomato | nucleus | 51.41 | 53.68 |
| KRH10909 | Soybean | nucleus | 46.48 | 47.83 |
| CDY50515 | Canola | nucleus | 52.82 | 47.77 |
| KRH21401 | Soybean | nucleus | 45.77 | 47.1 |
| CDY24113 | Canola | nucleus | 52.11 | 45.96 |
| KRH20415 | Soybean | nucleus | 45.07 | 45.07 |
| KRH50085 | Soybean | nucleus | 45.07 | 43.84 |
| CDY25876 | Canola | nucleus | 53.52 | 43.18 |
| CDY61210 | Canola | nucleus | 53.52 | 42.46 |
| CDX97645 | Canola | nucleus | 51.41 | 40.78 |
| CDX98540 | Canola | nucleus | 50.7 | 40.22 |
| CDY20128 | Canola | nucleus | 49.3 | 39.77 |
| CDY32310 | Canola | nucleus | 47.89 | 38.64 |
| Os07t0505200-01 | Rice | nucleus | 43.66 | 28.7 |
| EER97257 | Sorghum | nucleus | 42.96 | 28.37 |
| Zm00001d021573_P001 | Maize | mitochondrion | 37.32 | 25.73 |
| Zm00001d006451_P001 | Maize | mitochondrion | 42.96 | 24.02 |
| KXG36284 | Sorghum | nucleus | 36.62 | 23.85 |
| CDX90071 | Canola | nucleus | 39.44 | 17.95 |
| CDY61750 | Canola | nucleus | 38.73 | 17.86 |
| CDX95958 | Canola | nucleus | 37.32 | 17.73 |
| CDY38043 | Canola | nucleus | 40.85 | 17.31 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 7.04 | 17.24 |
| CDY47656 | Canola | nucleus | 38.73 | 16.98 |
| CDX98259 | Canola | nucleus | 38.03 | 16.62 |
| CDY69014 | Canola | nucleus | 37.32 | 16.61 |
| CDY15132 | Canola | nucleus | 26.76 | 16.31 |
| CDY50300 | Canola | nucleus | 37.32 | 16.16 |
| CDX81606 | Canola | nucleus | 37.32 | 15.92 |
| CDX96251 | Canola | nucleus | 36.62 | 15.85 |
| CDY45826 | Canola | nucleus | 38.03 | 15.84 |
| CDX84872 | Canola | nucleus | 38.03 | 15.84 |
| CDY27612 | Canola | nucleus | 36.62 | 15.81 |
| CDX71667 | Canola | nucleus | 39.44 | 15.6 |
| CDX67715 | Canola | nucleus | 34.51 | 15.51 |
| CDY06881 | Canola | nucleus | 38.73 | 15.15 |
| CDY14818 | Canola | nucleus | 38.73 | 14.99 |
| CDY34028 | Canola | nucleus | 36.62 | 14.94 |
| CDY67700 | Canola | nucleus | 35.92 | 14.74 |
| CDX84927 | Canola | nucleus | 37.32 | 14.44 |
| CDX79888 | Canola | nucleus | 37.32 | 14.4 |
| CDY53504 | Canola | nucleus | 37.32 | 14.32 |
| CDY03913 | Canola | nucleus | 36.62 | 14.02 |
| CDY11816 | Canola | nucleus | 35.92 | 13.97 |
| CDX84928 | Canola | nucleus | 35.21 | 13.74 |
| CDY27611 | Canola | nucleus | 35.21 | 13.7 |
| CDY32959 | Canola | nucleus | 37.32 | 13.59 |
| CDY43604 | Canola | nucleus | 36.62 | 13.51 |
| CDY15712 | Canola | nucleus | 35.21 | 13.37 |
| CDY15713 | Canola | nucleus | 36.62 | 13.33 |
| CDY03914 | Canola | nucleus | 34.51 | 13.17 |
| CDY47812 | Canola | nucleus | 39.44 | 10.85 |
| CDY22356 | Canola | nucleus | 39.44 | 10.79 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078FVP5 | UniProt:A0A078FVP5 | EnsemblPlants:CDY17204 | ProteinID:CDY17204 |
| ProteinID:CDY17204.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00095270001 |
| InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 | PIRSF:PIRSF037575 | PFscan:PS51141 | PANTHER:PTHR31251 |
| PANTHER:PTHR31251:SF62 | InterPro:SBP_dom | InterPro:SBP_fam | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EEAB1E |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g09840DSquamosa promoter-binding-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVP5]
Coordinates
chrLK032071:+:417632..418459
Molecular Weight (calculated)
16624.1 Da
IEP (calculated)
7.858
GRAVY (calculated)
-1.477
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMKGSKAEA KRSLREMSEE EEEEEEEDTF EEEEALEKKQ KGKATSSSSS STCQVERCTA DMSRAKQYHR RHKVCEFHAK APVVRIYSLH QRFCQQCSRF
101: HDLGEFDESK RSCRRRLAGH NERRRKSASE GERSQNHGSQ DY
101: HDLGEFDESK RSCRRRLAGH NERRRKSASE GERSQNHGSQ DY
001: MSMRRSKAEG KRSLRELSEE EEEEEETEDE DTFEEEEALE KKQKGKATSS SGVCQVESCT ADMSKAKQYH KRHKVCQFHA KAPHVRISGL HQRFCQQCSR
101: FHALSEFDEA KRSCRRRLAG HNERRRKSTT D
101: FHALSEFDEA KRSCRRRLAG HNERRRKSTT D
Arabidopsis Description
SPL3Squamosa promoter-binding-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P93015]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.