Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039656.1-P | Field mustard | nucleus | 98.32 | 97.78 |
| CDY24113 | Canola | nucleus | 87.71 | 97.52 |
| CDY25876 | Canola | nucleus | 83.8 | 85.23 |
| CDY50515 | Canola | nucleus | 70.39 | 80.25 |
| AT1G53160.1 | Thale cress | nucleus | 75.42 | 77.59 |
| CDY32310 | Canola | nucleus | 64.8 | 65.91 |
| CDX98540 | Canola | nucleus | 65.36 | 65.36 |
| CDX97645 | Canola | nucleus | 65.36 | 65.36 |
| CDY20128 | Canola | nucleus | 64.25 | 65.34 |
| VIT_10s0003g00050.t01 | Wine grape | nucleus | 43.58 | 55.71 |
| PGSC0003DMT400058753 | Potato | nucleus | 40.78 | 54.07 |
| CDY27935 | Canola | nucleus | 44.13 | 53.74 |
| CDY17204 | Canola | nucleus | 42.46 | 53.52 |
| Solyc10g009080.2.1 | Tomato | nucleus | 40.22 | 53.33 |
| PGSC0003DMT400076399 | Potato | nucleus | 38.55 | 50.74 |
| Solyc02g077920.2.1 | Tomato | nucleus | 37.43 | 49.26 |
| CDY57212 | Canola | nucleus | 36.87 | 46.81 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 15.08 | 46.55 |
| CDY37684 | Canola | nucleus | 36.31 | 46.1 |
| KRH21401 | Soybean | nucleus | 34.64 | 44.93 |
| KRH10909 | Soybean | nucleus | 34.64 | 44.93 |
| KRH50085 | Soybean | nucleus | 36.31 | 44.52 |
| KRH20415 | Soybean | nucleus | 35.2 | 44.37 |
| CDX79544 | Canola | nucleus | 37.99 | 36.36 |
| Os07t0505200-01 | Rice | nucleus | 37.99 | 31.48 |
| EER97257 | Sorghum | nucleus | 35.2 | 29.3 |
| Zm00001d021573_P001 | Maize | mitochondrion | 30.17 | 26.21 |
| Zm00001d006451_P001 | Maize | mitochondrion | 36.31 | 25.59 |
| KXG36284 | Sorghum | nucleus | 30.73 | 25.23 |
| CDX95958 | Canola | nucleus | 30.73 | 18.39 |
| CDX90071 | Canola | nucleus | 31.84 | 18.27 |
| CDY61750 | Canola | nucleus | 31.28 | 18.18 |
| CDX98259 | Canola | nucleus | 31.84 | 17.54 |
| CDY38043 | Canola | nucleus | 32.4 | 17.31 |
| CDY47656 | Canola | nucleus | 30.73 | 16.98 |
| CDY69014 | Canola | nucleus | 30.17 | 16.93 |
| CDY50300 | Canola | nucleus | 30.73 | 16.77 |
| CDY45826 | Canola | nucleus | 31.84 | 16.72 |
| CDX96251 | Canola | nucleus | 30.17 | 16.46 |
| CDX71667 | Canola | nucleus | 32.96 | 16.43 |
| CDX84872 | Canola | nucleus | 31.28 | 16.42 |
| CDY34028 | Canola | nucleus | 31.84 | 16.38 |
| CDX81606 | Canola | nucleus | 30.17 | 16.22 |
| CDX67715 | Canola | nucleus | 27.93 | 15.82 |
| CDY14818 | Canola | nucleus | 32.4 | 15.8 |
| CDX79888 | Canola | nucleus | 32.4 | 15.76 |
| CDY06881 | Canola | nucleus | 31.84 | 15.7 |
| CDY53504 | Canola | nucleus | 32.4 | 15.68 |
| CDY15132 | Canola | nucleus | 20.11 | 15.45 |
| CDY27612 | Canola | nucleus | 27.37 | 14.89 |
| CDY67700 | Canola | nucleus | 27.93 | 14.45 |
| CDY03913 | Canola | nucleus | 29.61 | 14.29 |
| CDX84927 | Canola | nucleus | 29.05 | 14.17 |
| CDX84928 | Canola | nucleus | 28.49 | 14.01 |
| CDY15713 | Canola | nucleus | 30.17 | 13.85 |
| CDY11816 | Canola | nucleus | 27.93 | 13.7 |
| CDY27611 | Canola | nucleus | 27.93 | 13.7 |
| CDY15712 | Canola | nucleus | 27.37 | 13.1 |
| CDY03914 | Canola | nucleus | 26.82 | 12.9 |
| CDY43604 | Canola | nucleus | 27.37 | 12.73 |
| CDY32959 | Canola | nucleus | 27.37 | 12.56 |
| CDY22356 | Canola | nucleus | 27.93 | 9.63 |
| CDY47812 | Canola | nucleus | 27.37 | 9.5 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078JAJ6 | UniProt:A0A078JAJ6 | EnsemblPlants:CDY61210 | ProteinID:CDY61210 |
| ProteinID:CDY61210.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00030719001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PIRSF:PIRSF037575 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF64 |
| InterPro:SBP_dom | InterPro:SBP_fam | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EF16F9 | SEG:seg |
Description
BnaC06g41420DSquamosa promoter-binding-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAJ6]
Coordinates
chrLK033969:+:3638..4596
Molecular Weight (calculated)
20393.1 Da
IEP (calculated)
10.094
GRAVY (calculated)
-1.188
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGKKTQGQG YLKKKASVSY LVEEELENDT DGEEEEKRKG VTDRFKGSSG SNDRGSSRLC QVDRCTADLK EAKQYHRRHK VCEVHAKASS VYLTGVKQRF
101: CQQCSRFHEL LEFDEAKKSC RKRLAGHNER RRKSSGESIG EGSGGRRGIT AQMIQNQERS RVEMTLPMSN TSFKRPQIK
101: CQQCSRFHEL LEFDEAKKSC RKRLAGHNER RRKSSGESIG EGSGGRRGIT AQMIQNQERS RVEMTLPMSN TSFKRPQIK
001: MEGKRSQGQG YMKKKSYLVE EDMETDTDEE EEVGRDRVRG SRGSINRGGS LRLCQVDRCT ADMKEAKLYH RRHKVCEVHA KASSVFLSGL NQRFCQQCSR
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRVEMT LPMPNSSFKR PQIR
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRVEMT LPMPNSSFKR PQIR
Arabidopsis Description
SPL4Squamosa promoter-binding-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.