Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61750 | Canola | nucleus | 82.72 | 87.01 |
| CDX67715 | Canola | nucleus | 68.83 | 70.57 |
| CDX98259 | Canola | nucleus | 70.06 | 69.85 |
| AT3G57920.1 | Thale cress | nucleus | 72.22 | 66.1 |
| CDX79888 | Canola | nucleus | 50.62 | 44.57 |
| CDY06881 | Canola | nucleus | 49.38 | 44.08 |
| CDY53504 | Canola | nucleus | 50.31 | 44.05 |
| CDY14818 | Canola | nucleus | 49.38 | 43.6 |
| CDY17204 | Canola | nucleus | 16.98 | 38.73 |
| CDY57212 | Canola | nucleus | 16.67 | 38.3 |
| VIT_08s0007g06270.t01 | Wine grape | nucleus | 43.83 | 37.47 |
| CDY27935 | Canola | nucleus | 16.98 | 37.41 |
| CDY37684 | Canola | nucleus | 16.05 | 36.88 |
| CDY50515 | Canola | nucleus | 17.59 | 36.31 |
| KRH67040 | Soybean | nucleus | 38.89 | 34.33 |
| KRG95361 | Soybean | nucleus | 37.35 | 33.7 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 29.63 | 33.68 |
| CDY25876 | Canola | nucleus | 17.9 | 32.95 |
| CDY24113 | Canola | nucleus | 16.36 | 32.92 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 34.26 | 32.55 |
| Solyc10g078700.1.1 | Tomato | nucleus | 37.35 | 32.53 |
| PGSC0003DMT400029751 | Potato | nucleus | 37.35 | 32.53 |
| KRH38141 | Soybean | nucleus, plastid | 36.42 | 31.64 |
| CDY20128 | Canola | nucleus | 16.98 | 31.25 |
| CDX97645 | Canola | nucleus | 16.98 | 30.73 |
| CDY61210 | Canola | nucleus | 16.98 | 30.73 |
| KRH71914 | Soybean | nucleus, plastid | 33.95 | 30.73 |
| CDY32310 | Canola | nucleus | 16.67 | 30.68 |
| CDX98540 | Canola | nucleus | 16.67 | 30.17 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 31.48 | 29.74 |
| CDX79544 | Canola | nucleus | 16.05 | 27.81 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 29.63 | 27.75 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 29.32 | 27.62 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 29.01 | 26.33 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 32.72 | 25.79 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 19.44 | 25.61 |
| CDX95958 | Canola | nucleus | 23.46 | 25.42 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 28.7 | 25.2 |
| Zm00001d006028_P001 | Maize | nucleus | 29.01 | 24.54 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 29.01 | 24.23 |
| Zm00001d020941_P001 | Maize | nucleus | 28.09 | 24.07 |
| CDY50300 | Canola | nucleus | 24.07 | 23.78 |
| CDX96251 | Canola | nucleus | 24.07 | 23.78 |
| CDX81606 | Canola | nucleus | 24.38 | 23.72 |
| TraesCS7B01G144900.1 | Wheat | nucleus | 28.09 | 23.58 |
| CDY69014 | Canola | nucleus | 23.15 | 23.51 |
| TraesCS7D01G245200.2 | Wheat | nucleus | 27.78 | 23.38 |
| Os08t0509600-01 | Rice | nucleus | 29.94 | 23.26 |
| TraesCS5B01G265600.2 | Wheat | nucleus | 28.4 | 23.23 |
| Zm00001d031451_P001 | Maize | nucleus | 28.7 | 23.08 |
| TraesCS7A01G246500.1 | Wheat | nucleus | 27.47 | 23.06 |
| EER99092 | Sorghum | nucleus | 27.47 | 22.94 |
| TraesCS5D01G273900.2 | Wheat | nucleus | 28.7 | 22.79 |
| EES14266 | Sorghum | nucleus | 28.7 | 22.74 |
| TraesCS5A01G265900.2 | Wheat | nucleus | 28.7 | 22.63 |
| Os09t0491532-01 | Rice | nucleus | 22.22 | 22.29 |
| HORVU5Hr1G073440.7 | Barley | nucleus | 28.4 | 22.12 |
| Zm00001d052890_P001 | Maize | nucleus | 27.47 | 21.81 |
| CDX84872 | Canola | nucleus | 22.53 | 21.41 |
| CDY45826 | Canola | nucleus | 22.53 | 21.41 |
| CDY43604 | Canola | nucleus | 24.38 | 20.52 |
| CDY34028 | Canola | nucleus | 21.91 | 20.4 |
| CDY27612 | Canola | nucleus | 20.68 | 20.36 |
| CDX71667 | Canola | nucleus | 22.53 | 20.33 |
| CDY67700 | Canola | nucleus | 21.6 | 20.23 |
| CDX90071 | Canola | nucleus | 19.44 | 20.19 |
| CDY32959 | Canola | nucleus | 24.07 | 20.0 |
| CDX84927 | Canola | nucleus | 22.22 | 19.62 |
| CDY38043 | Canola | nucleus | 20.06 | 19.4 |
| CDY11816 | Canola | nucleus | 21.6 | 19.18 |
| CDY03913 | Canola | nucleus | 21.6 | 18.87 |
| CDX84928 | Canola | nucleus | 20.99 | 18.68 |
| CDY27611 | Canola | nucleus | 20.99 | 18.63 |
| CDY15713 | Canola | nucleus | 21.91 | 18.21 |
| CDY15712 | Canola | nucleus | 20.99 | 18.18 |
| CDY15132 | Canola | nucleus | 12.96 | 18.03 |
| CDY03914 | Canola | nucleus | 20.68 | 18.01 |
| CDY47812 | Canola | nucleus | 23.77 | 14.92 |
| CDY22356 | Canola | nucleus | 23.46 | 14.64 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.23 | 6.9 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078ICR6 | UniProt:A0A078ICR6 | EnsemblPlants:CDY47656 | ProteinID:CDY47656 |
| ProteinID:CDY47656.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00087887001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom |
| InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EB1ABD | SEG:seg | : | : |
Description
BnaC04g23930DBnaC04g23930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICR6]
Coordinates
chrLK032728:+:29605..32118
Molecular Weight (calculated)
36120.4 Da
IEP (calculated)
9.022
GRAVY (calculated)
-0.630
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MELLMGSGQN RTETVGSSST ESSSLTTGFR FGQKIDFEDG SGSGKNRANK CRKSVTAARC QVEGCRMDLS NAKTYYSRHK VCCIHSKSSK VIVSGLHQRF
101: CQQCSRFHQL AEFDLEKRSC RRRLACHNER RRKPQATTAA LLASGYSRIA PSLYGSVLGD PTTWSTARSV MGRSAPWDSH QLMNVLSQGS SRFSITYPEM
201: VNNNSTDSSC ALSLLSNSNT TQQQQQTSTN AYLMDAERVT MAKSPPVSVH NQYSKQTWEF MSGEKSNWPC VSSPVLGLRQ ISEPDDDLQF LMSNGTTMGG
301: FELNLQQEQV LRQYSSTQNF TWPL
101: CQQCSRFHQL AEFDLEKRSC RRRLACHNER RRKPQATTAA LLASGYSRIA PSLYGSVLGD PTTWSTARSV MGRSAPWDSH QLMNVLSQGS SRFSITYPEM
201: VNNNSTDSSC ALSLLSNSNT TQQQQQTSTN AYLMDAERVT MAKSPPVSVH NQYSKQTWEF MSGEKSNWPC VSSPVLGLRQ ISEPDDDLQF LMSNGTTMGG
301: FELNLQQEQV LRQYSSTQNF TWPL
001: MELLMCSGQA ESGGSSSTES SSLSGGLRFG QKIYFEDGSG SRSKNRVNTV RKSSTTARCQ VEGCRMDLSN VKAYYSRHKV CCIHSKSSKV IVSGLHQRFC
101: QQCSRFHQLS EFDLEKRSCR RRLACHNERR RKPQPTTALF TSHYSRIAPS LYGNPNAAMI KSVLGDPTAW STARSVMQRP GPWQINPVRE THPHMNVLSH
201: GSSSFTTCPE MINNNSTDSS CALSLLSNSY PIHQQQLQTP TNTWRPSSGF DSMISFSDKV TMAQPPPIST HQPPISTHQQ YLSQTWEVIA GEKSNSHYMS
301: PVSQISEPAD FQISNGTTMG GFELYLHQQV LKQYMEPENT RAYDSSPQHF NWSL
101: QQCSRFHQLS EFDLEKRSCR RRLACHNERR RKPQPTTALF TSHYSRIAPS LYGNPNAAMI KSVLGDPTAW STARSVMQRP GPWQINPVRE THPHMNVLSH
201: GSSSFTTCPE MINNNSTDSS CALSLLSNSY PIHQQQLQTP TNTWRPSSGF DSMISFSDKV TMAQPPPIST HQPPISTHQQ YLSQTWEVIA GEKSNSHYMS
301: PVSQISEPAD FQISNGTTMG GFELYLHQQV LKQYMEPENT RAYDSSPQHF NWSL
Arabidopsis Description
SPL15Squamosa promoter-binding-like protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Q6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.