CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67040	Soybean	nucleus	91.64	89.65
KRH38141	Soybean	nucleus, plastid	69.36	66.76
KRH71914	Soybean	nucleus, plastid	65.74	65.92
VIT_08s0007g06270.t01	Wine grape	nucleus	61.84	58.58
PGSC0003DMT400029751	Potato	nucleus	50.14	48.39
Solyc10g078700.1.1	Tomato	nucleus	49.58	47.85
GSMUA_Achr4P03880_001	Banana	nucleus	37.6	47.37
GSMUA_Achr7P20510_001	Banana	nucleus	43.18	45.45
KRH20415	Soybean	nucleus	16.99	42.96
KRH50085	Soybean	nucleus	17.27	42.47
GSMUA_Achr9P22260_001	Banana	nucleus	40.39	42.27
KRH21401	Soybean	nucleus	16.16	42.03
AT2G42200.1	Thale cress	nucleus	43.45	41.6
CDY06881	Canola	nucleus	41.78	41.32
Bra016891.1-P	Field mustard	nucleus	41.78	41.32
KRH10909	Soybean	nucleus	15.88	41.3
CDX79888	Canola	nucleus	42.06	41.03
CDY14818	Canola	nucleus	41.78	40.87
Bra004674.1-P	Field mustard	nucleus	41.5	40.38
CDY53504	Canola	nucleus	41.5	40.27
CDX98259	Canola	nucleus	35.65	39.38
CDY61750	Canola	nucleus	33.7	39.29
CDX67715	Canola	nucleus	34.54	39.24
Bra003305.1-P	Field mustard	nucleus	33.98	38.61
KRH55227	Soybean	nucleus	19.5	37.84
CDY47656	Canola	nucleus	33.7	37.35
Bra014599.1-P	Field mustard	nucleus	31.2	37.09
GSMUA_Achr9P20220_001	Banana	nucleus	25.35	36.99
KRH27270	Soybean	nucleus	19.22	36.9
AT3G57920.1	Thale cress	nucleus	35.93	36.44
KRH22053	Soybean	nucleus	18.94	36.36
GSMUA_Achr6P22280_001	Banana	nucleus	40.67	35.52
KRG88838	Soybean	nucleus	18.66	35.26
GSMUA_Achr8P25550_001	Banana	nucleus	33.43	34.88
KRH28893	Soybean	nucleus	13.93	34.25
TraesCS7D01G245200.2	Wheat	nucleus	35.93	33.51
TraesCS7B01G144900.1	Wheat	nucleus	35.93	33.42
TraesCS7A01G246500.1	Wheat	nucleus	35.38	32.9
Zm00001d020941_P001	Maize	nucleus	34.54	32.8
EER99092	Sorghum	nucleus	35.38	32.73
KRG88952	Soybean	nucleus	20.33	32.59
GSMUA_Achr4P01450_001	Banana	nucleus	32.31	32.49
GSMUA_Achr7P02020_001	Banana	nucleus	31.2	32.37
GSMUA_Achr9P27660_001	Banana	nucleus	32.87	31.98
KRH22367	Soybean	nucleus	13.93	31.65
Zm00001d006028_P001	Maize	nucleus	33.15	31.07
GSMUA_Achr3P11170_001	Banana	nucleus	32.87	30.41
EES14266	Sorghum	nucleus	34.54	30.32
Zm00001d031451_P001	Maize	nucleus	33.98	30.27
Zm00001d052890_P001	Maize	nucleus	33.7	29.66
Os08t0509600-01	Rice	nucleus	34.26	29.5
TraesCS5B01G265600.2	Wheat	nucleus	32.03	29.04
TraesCS5A01G265900.2	Wheat	nucleus	33.15	28.95
TraesCS5D01G273900.2	Wheat	nucleus	32.31	28.43
Os09t0491532-01	Rice	nucleus	25.07	27.86
HORVU5Hr1G073440.7	Barley	nucleus	32.03	27.64
KRH63786	Soybean	nucleus	23.96	23.18
KRH75288	Soybean	nucleus	18.38	23.0
KRG94562	Soybean	nucleus	23.12	22.74
KRH06918	Soybean	nucleus	23.12	22.74
KRH48746	Soybean	nucleus	21.17	22.22
KRH48747	Soybean	nucleus	20.89	22.19
KRG97402	Soybean	nucleus	26.74	22.17
KRH66611	Soybean	nucleus	20.61	22.02
KRH75287	Soybean	nucleus	20.89	21.8
KRH31506	Soybean	nucleus	26.74	21.67
KRH66613	Soybean	nucleus	20.33	21.34
KRH59812	Soybean	nucleus	23.12	21.28
KRH41121	Soybean	nucleus	23.12	20.96
KRH54164	Soybean	nucleus	23.96	20.77
KRH54739	Soybean	nucleus	21.45	20.26
KRH07602	Soybean	nucleus	11.42	18.98
KRH75117	Soybean	nucleus	25.07	18.63
KRH70968	Soybean	nucleus	23.96	17.84
KRH63174	Soybean	nucleus	25.35	16.13
KRH56776	Soybean	nucleus	24.51	16.03
KRH03167	Soybean	nucleus	24.23	15.99

Protein Annotations

EntrezGene:100807165	MapMan:15.5.18	Gene3D:4.10.1100.10	EMBL:ACUP02012103	EnsemblPlantsGene:GLYMA_19G146000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	UniProt:I1N969	InterPro:IPR004333	InterPro:IPR036893	EnsemblPlants:KRG95361
ProteinID:KRG95361	ProteinID:KRG95361.1	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF56
InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI0001875264	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:-:40694917..40699755

Molecular Weight (calculated)

38548.8 Da

IEP (calculated)

9.264

GRAVY (calculated)

-0.547

Length

359 amino acids

Sequence
(BLAST)

001: MASDAKLSSS ESLNGLKFGQ KIYFEDVGLA TPATSLTSSS SSSSAATVTS SSSSRKGRGG SVQPAQPPRC QVEGCKVDLS DAKAYYSRHK VCGMHSKSPS
101: VIVAGLQQRF CQQCSRFHQL PEFDQGKRSC RRRLAGHNER RRKPPTSSLL TSRYARLSSS AFDNSGRGSN FLMELTSYPK LSLRNSLPTP RSSELAPGNQ
201: TSTLSWNGNS ETSSDLFLQG SVGGTSFASP GHPPGESYIG VTDTSCALSL LSNQTWGSRN TAPSLGLSNM INFNGTPLTQ LAASSHGASI HQLPNTSWFF
301: KGIDSGNCSP EVVPDLGLGQ ISQPLNSQLH GELDLSQQGR RHYMDLEQSR AYESAHWSL

Best Arabidopsis Sequence Match ( AT2G42200.1 )
(BLAST)

001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL

Arabidopsis Description

SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.