Factsheet for Solyc10g078700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029751	Potato	nucleus	97.85	97.85
VIT_08s0007g06270.t01	Wine grape	nucleus	61.83	60.69
KRG95361	Soybean	nucleus	47.85	49.58
KRH67040	Soybean	nucleus	48.39	49.05
GSMUA_Achr4P03880_001	Banana	nucleus	35.22	45.96
KRH38141	Soybean	nucleus, plastid	45.7	45.58
Solyc02g077920.2.1	Tomato	nucleus	15.86	43.38
GSMUA_Achr9P22260_001	Banana	nucleus	39.78	43.15
Solyc10g009080.2.1	Tomato	nucleus	15.59	42.96
KRH71914	Soybean	nucleus, plastid	41.13	42.74
Solyc07g053810.2.1	Tomato	nucleus	16.67	42.18
Solyc07g062980.2.1	Tomato	nucleus	14.78	41.67
GSMUA_Achr7P20510_001	Banana	nucleus	37.9	41.35
CDY61750	Canola	nucleus	32.8	39.61
CDX98259	Canola	nucleus	34.41	39.38
CDX67715	Canola	nucleus	33.33	39.24
AT2G42200.1	Thale cress	nucleus	39.25	38.93
Bra003305.1-P	Field mustard	nucleus	33.06	38.92
CDX79888	Canola	nucleus	37.63	38.04
CDY06881	Canola	nucleus	36.83	37.74
Bra014599.1-P	Field mustard	nucleus	30.38	37.42
CDY47656	Canola	nucleus	32.53	37.35
AT3G57920.1	Thale cress	nucleus	35.22	37.01
GSMUA_Achr8P25550_001	Banana	nucleus	34.14	36.92
Bra016891.1-P	Field mustard	nucleus	36.02	36.91
Bra004674.1-P	Field mustard	nucleus	36.56	36.86
CDY53504	Canola	nucleus	36.56	36.76
CDY14818	Canola	nucleus	36.02	36.51
GSMUA_Achr6P22280_001	Banana	nucleus	38.98	35.28
GSMUA_Achr9P20220_001	Banana	nucleus	22.58	34.15
GSMUA_Achr4P01450_001	Banana	nucleus	32.26	33.61
GSMUA_Achr9P27660_001	Banana	nucleus	32.8	33.06
GSMUA_Achr7P02020_001	Banana	nucleus	30.65	32.95
TraesCS5B01G265600.2	Wheat	nucleus	32.8	30.81
GSMUA_Achr3P11170_001	Banana	nucleus	31.99	30.67
TraesCS5D01G273900.2	Wheat	nucleus	32.8	29.9
TraesCS7D01G245200.2	Wheat	nucleus	30.91	29.87
Os09t0491532-01	Rice	nucleus	25.81	29.72
TraesCS7B01G144900.1	Wheat	nucleus	30.65	29.53
TraesCS7A01G246500.1	Wheat	nucleus	30.65	29.53
TraesCS5A01G265900.2	Wheat	nucleus	32.53	29.44
EER99092	Sorghum	nucleus	30.65	29.38
Zm00001d020941_P001	Maize	nucleus	29.84	29.37
HORVU5Hr1G073440.7	Barley	nucleus	32.8	29.33
EES14266	Sorghum	nucleus	31.18	28.36
Zm00001d031451_P001	Maize	nucleus	30.38	28.04
Zm00001d052890_P001	Maize	nucleus	30.38	27.7
Zm00001d006028_P001	Maize	nucleus	28.49	27.68
Os08t0509600-01	Rice	nucleus	30.38	27.1
Solyc05g015840.2.1	Tomato	nucleus	21.77	25.96
Solyc10g018780.1.1	Tomato	nucleus	19.89	25.26
Solyc01g090730.2.1	Tomato	nucleus	19.35	24.08
Solyc03g114850.2.1	Tomato	nucleus	16.67	23.4
Solyc05g015510.2.1	Tomato	nucleus	26.61	21.38
Solyc04g045560.2.1	Tomato	nucleus	19.89	21.14
Solyc12g038520.1.1	Tomato	nucleus	22.85	19.02
Solyc05g012040.2.1	Tomato	nucleus	25.81	17.2

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	UniProt:K4D2B2	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF56
InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	EnsemblPlantsGene:Solyc10g078700.1	EnsemblPlants:Solyc10g078700.1.1	UniParc:UPI000276A3DE
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:60429506..60434196

Molecular Weight (calculated)

40000.1 Da

IEP (calculated)

8.638

GRAVY (calculated)

-0.727

Length

372 amino acids

Sequence
(BLAST)

001: MELGSVSSSG NSSSSDSLNG LKFGKKIYFG NAGVGVQVKN GCGSSPVNGD GNLPPAPATT KRGRGGLVQG GHPPRCQVEG CQADLSDAKA YYSRHKVCGM
101: HSKSPTVVVA GLEQRFCQQC SRFHQLTEFD QGKRSCRRRL ACHNERRRKP PSGSLFSTHY GNLSSSIFEN NSSRSGSFLV DFSSHQNVNE SSWPNTRASE
201: QGWDHQSSGK FLQRPWLNNS ENAASELVLQ GSATRTSYHG VPSGDYFPGV SDSSGALSLL SNRSWGSRNR PPSLGVNSQV HIDGVHTIQP SGSHGAPTNH
301: FSSPSLSFKG NEASSSSHEM PPDLGLGQML QASDNPYCGE LGMAQHGDGR QYMELDQSKG YHPSVQNVHW TL

Best Arabidopsis Sequence Match ( AT2G42200.1 )
(BLAST)

001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL

Arabidopsis Description

SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.