Factsheet for Solyc12g038520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059813	Potato	nucleus	93.96	92.11
VIT_17s0000g05020.t01	Wine grape	nucleus	56.82	45.6
KRH54739	Soybean	nucleus	38.03	44.74
Solyc02g077920.2.1	Tomato	nucleus	13.42	44.12
Solyc10g009080.2.1	Tomato	nucleus	12.75	42.22
KRH56776	Soybean	nucleus	51.23	41.71
Solyc07g053810.2.1	Tomato	nucleus	13.65	41.5
KRH63174	Soybean	nucleus	52.13	41.31
KRH03167	Soybean	nucleus	49.44	40.62
Solyc07g062980.2.1	Tomato	nucleus	10.96	37.12
Solyc03g114850.2.1	Tomato	nucleus	19.46	32.83
CDX95958	Canola	nucleus	21.7	32.44
Bra004363.1-P	Field mustard	nucleus	21.48	31.89
CDY69014	Canola	nucleus	22.6	31.66
Bra038324.1-P	Field mustard	nucleus	21.03	28.83
CDY50300	Canola	nucleus	20.81	28.35
CDX96251	Canola	nucleus	20.58	28.05
CDX81606	Canola	nucleus	20.81	27.93
Solyc05g015840.2.1	Tomato	nucleus	19.46	27.88
AT1G69170.1	Thale cress	nucleus	23.94	26.42
Solyc01g090730.2.1	Tomato	nucleus	17.23	25.75
Solyc10g018780.1.1	Tomato	nucleus	15.88	24.23
Solyc10g078700.1.1	Tomato	nucleus	19.02	22.85
Solyc05g012040.2.1	Tomato	nucleus	25.5	20.43
Solyc04g045560.2.1	Tomato	nucleus	14.77	18.86
Solyc05g015510.2.1	Tomato	nucleus	18.79	18.14

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	UniProt:K4DEK1	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF22
InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	EnsemblPlantsGene:Solyc12g038520.1	EnsemblPlants:Solyc12g038520.1.1	UniParc:UPI000276A4D1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:47390822..47392872

Molecular Weight (calculated)

49539.6 Da

IEP (calculated)

8.297

GRAVY (calculated)

-0.661

Length

447 amino acids

Sequence
(BLAST)

001: MESWSYVSGG KGFVSEESVS VDDGITPCSW SQQGVKVGSQ IRDAFGGEDE SSSKHSSSSF IDLKLGRGRF LDVKNFSLSS TKRNRAGGLN SFCQVQGCGK
101: DLTSCKDYHK RHKVCEIHSK TAKVIVNGIQ QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH NERRRKPHTG LHSGRAGKHF QPYSGTRFQG SSFVTSSFIC
201: QDILGGSLLH QPKHDMHDWY KNVKVEHCSD YSPELTMPFT NKHSQPRPLF TSYHTDKHCP ALHDEGITTI TRSKNNESSN SYLNDIGGSD FVSRSLFHST
301: SIGSDVLNVM DSDSPFQGIS NSGCALSLLS SQSQDSSNYS SVVPPSAHHL ITPRSYNHYN MTQTSECFPE ASPKGSTSTV STIYNLSEVI SAKGQLEHIL
401: RNNCGSLQGS DYVNTKNLLS CEDGTTIDLL QLSSQLHQVE HQRRSMK

Best Arabidopsis Sequence Match ( AT1G69170.1 )
(BLAST)

001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS

Arabidopsis Description

SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.