Factsheet for Bra038324.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50300	Canola	nucleus	99.08	98.48
CDX96251	Canola	nucleus	98.77	98.17
Bra004363.1-P	Field mustard	nucleus	64.11	69.44
AT1G69170.1	Thale cress	nucleus	74.85	60.25
Bra021880.1-P	Field mustard	nucleus	17.18	39.72
Bra005470.1-P	Field mustard	nucleus	16.56	38.03
Bra032662.1-P	Field mustard	nucleus	18.4	37.97
Bra027265.1-P	Field mustard	nucleus	17.48	31.84
Bra039656.1-P	Field mustard	nucleus	17.18	31.11
Bra021094.1-P	Field mustard	nucleus	16.56	30.68
Bra038101.1-P	Field mustard	nucleus	17.18	30.6
KRH75117	Soybean	nucleus	41.41	27.95
KRH70968	Soybean	nucleus	40.8	27.59
Solyc03g114850.2.1	Tomato	nucleus	21.47	26.42
Bra022766.1-P	Field mustard	nucleus	24.85	23.68
Bra014599.1-P	Field mustard	nucleus	21.17	22.85
Bra003305.1-P	Field mustard	nucleus	22.09	22.78
Bra016891.1-P	Field mustard	nucleus	25.15	22.59
Bra004674.1-P	Field mustard	nucleus	25.46	22.49
KRH54739	Soybean	nucleus	26.07	22.37
Bra033671.1-P	Field mustard	nucleus	23.93	21.55
Solyc05g012040.2.1	Tomato	nucleus	36.2	21.15
Bra032823.1-P	Field mustard	nucleus	21.17	21.04
Bra033221.1-P	Field mustard	nucleus	21.17	21.04
Solyc12g038520.1.1	Tomato	nucleus	28.83	21.03
PGSC0003DMT400072745	Potato	nucleus	35.28	20.61
Bra032822.1-P	Field mustard	nucleus	23.01	20.55
PGSC0003DMT400059813	Potato	nucleus	28.53	20.39
Bra030041.1-P	Field mustard	nucleus	22.7	19.79
Bra027478.1-P	Field mustard	nucleus	23.62	19.74
KRH03167	Soybean	nucleus	32.82	19.67
Bra030040.1-P	Field mustard	nucleus	23.31	19.49
Bra010949.1-P	Field mustard	nucleus	21.78	19.4
VIT_01s0011g00130.t01	Wine grape	nucleus	30.06	19.33
KRH56776	Soybean	nucleus	32.52	19.31
KRH63174	Soybean	nucleus	32.21	18.62
VIT_17s0000g05020.t01	Wine grape	nucleus	31.29	18.31
PGSC0003DMT400063046	Potato	nucleus	28.53	18.02

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EnsemblPlantsGene:Bra038324	EnsemblPlants:Bra038324.1	EnsemblPlants:Bra038324.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	UniProt:M4FB58	PFAM:PF03110
PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF62	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612
UniParc:UPI0002546693	SEG:seg	:	:	:	:

Description

AT1G69170 (E=2e-056) | squamosa promoter-binding protein-like 6 (SPL6)

Coordinates

chrA02:+:11265262..11266388

Molecular Weight (calculated)

37074.2 Da

IEP (calculated)

8.909

GRAVY (calculated)

-0.775

Length

326 amino acids

Sequence
(BLAST)

001: MDSWSYGRSV FLPNGTIAEN QSSMPGFEME TSDGFITKVA SSSYLEENQS SNLSRIDFKF RSYENHGGTS TLPSKKTRAS NSCLQSPPLC QVYGCNMDLS
101: FSKDYHKRHR VCEAHSKSSV VIVSGVEQRF CQQCSRFHFL SEFDDGKRSC RRRLAGHNER RRKPSFYFLP GKRHKLLPQE SFPGSFLYDH RASRLVSFKD
201: EPKPAMEASG VSYIWDLQEA VPRSTCALSL LSAQSQQHLS ENNPNKSFSI TQPSQNLNHS IGDYHQMQPL RIDKKTKSVT SSSSCNGNGS STVDLLQLSS
301: HLQRIQQQQR TFTDDVKQEY NELYFP

Best Arabidopsis Sequence Match ( AT1G69170.1 )
(BLAST)

001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS

Arabidopsis Description

SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.