Factsheet for VIT_17s0000g05020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56776	Soybean	nucleus	60.5	61.38
KRH54739	Soybean	nucleus	41.65	61.05
KRH63174	Soybean	nucleus	60.5	59.75
KRH03167	Soybean	nucleus	57.81	59.19
Solyc12g038520.1.1	Tomato	nucleus	45.6	56.82
PGSC0003DMT400059813	Potato	nucleus	45.96	56.14
VIT_10s0003g00050.t01	Wine grape	nucleus	10.77	42.86
VIT_12s0028g03350.t01	Wine grape	nucleus	10.77	35.5
Solyc03g114850.2.1	Tomato	nucleus	16.7	35.09
CDX95958	Canola	nucleus	18.67	34.78
Bra004363.1-P	Field mustard	nucleus	18.49	34.22
VIT_04s0210g00170.t01	Wine grape	nucleus	12.57	33.82
CDY69014	Canola	nucleus	18.85	32.92
VIT_01s0010g03910.t01	Wine grape	nucleus	22.44	32.13
Bra038324.1-P	Field mustard	nucleus	18.31	31.29
CDY50300	Canola	nucleus	18.31	31.1
CDX96251	Canola	nucleus	18.13	30.79
VIT_19s0014g02350.t01	Wine grape	nucleus	11.13	30.39
CDX81606	Canola	nucleus	18.13	30.33
AT1G69170.1	Thale cress	nucleus	20.83	28.64
VIT_17s0000g01260.t01	Wine grape	nucleus	20.29	28.18
VIT_15s0021g02290.t01	Wine grape	nucleus	19.93	27.82
VIT_08s0007g06270.t01	Wine grape	nucleus	18.31	26.91
VIT_15s0021g02300.t01	Wine grape	nucleus	14.18	25.99
VIT_14s0068g01780.t01	Wine grape	nucleus	17.41	25.66
VIT_01s0011g00130.t01	Wine grape	nucleus	22.8	25.05
PGSC0003DMT400063046	Potato	nucleus	22.98	24.81
VIT_11s0065g00170.t01	Wine grape	nucleus	18.49	22.15
VIT_01s0010g03710.t01	Wine grape	nucleus	18.31	21.38

Protein Annotations

EntrezGene:100260293	wikigene:100260293	MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:CCB43152	ProteinID:CCB43152.1
UniProt:F6GTE3	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	EntrezGene:LOC100260293	wikigene:LOC100260293	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251
PANTHER:PTHR31251:SF22	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI0001985033	ArrayExpress:VIT_17s0000g05020
EnsemblPlantsGene:VIT_17s0000g05020	EnsemblPlants:VIT_17s0000g05020.t01	unigene:Vvi.19942	RefSeq:XP_002265203	RefSeq:XP_002265203.1	RefSeq:XP_010663469.1
RefSeq:XP_010663470.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:+:5506041..5513173

Molecular Weight (calculated)

61080.5 Da

IEP (calculated)

7.166

GRAVY (calculated)

-0.531

Length

557 amino acids

Sequence
(BLAST)

001: MGSWSYVSQE KEFVSDATDL QPNSSARSKN VFMGWELKTP CGYGNSILVS SQQVIQNQGF GEFGIPEMVR KQLPDNSIRD VSCGKGGDGI MVNSIMVSPN
101: VFPRDDESSS KLSSSVMESN SQDSLLIDLK LGRFADHSDS QNCKPSKANP SLPSAESSTP AKRVRAVGLN SQTAFCQVHG CNKDLSSSKD YHKRHKVCEV
201: HSKTAKVIVN GIEQRFCQQC SRFHLLAEFD DGKRSCRKRL AGHNERRRKP QVGIHPGRAG RLLQSYNGYA GNRFQGTTLT TASFICQDIL PSGLLPPEKY
301: GMSDWCKRIK VEDGTDYSPQ STIPITNGHP HPKSLFPTFE FEKQYSSFQD NGANTGSIFS EHNSRYPHDL ADANSGPHSF FQDTSLGNED LSVFDAGSTV
401: QALSGISDSG RALSLLSSQS QNSSSHSSGI PMIHPLIMPG CHAHYNIAQV SEKFLGVSPQ VSMSRVPNKF LSSGMNSAEG NHLGPILISD CSEPVNFEVT
501: DGIFQGSDFV NTKDCLPCET GPTIDLLQLS SQLHRVEHQR QSIHVKQEND TFCLRIT

Best Arabidopsis Sequence Match ( AT1G69170.1 )
(BLAST)

001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS

Arabidopsis Description

SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.