Factsheet for VIT_15s0021g02300.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074976	Potato	nucleus	59.54	61.77
Bra032662.1-P	Field mustard	nucleus	31.58	60.76
Solyc10g018780.1.1	Tomato	nucleus	58.55	60.75
KRH66611	Soybean	nucleus	64.47	58.33
KRH48747	Soybean	nucleus	64.47	57.99
Solyc01g090730.2.1	Tomato	nucleus	54.28	55.18
PGSC0003DMT400066955	Potato	nucleus	53.62	53.97
KRH75288	Soybean	nucleus	47.7	50.52
AT1G02065.1	Thale cress	nucleus	53.95	49.25
Bra033221.1-P	Field mustard	nucleus	52.96	49.09
CDX90071	Canola	nucleus	50.33	49.04
CDY38043	Canola	nucleus	52.63	47.76
KRH07602	Soybean	nucleus	33.22	46.76
CDY15132	Canola	nucleus	33.88	44.21
VIT_10s0003g00050.t01	Wine grape	nucleus	19.08	41.43
VIT_12s0028g03350.t01	Wine grape	nucleus	20.07	36.09
GSMUA_Achr4P24610_001	Banana	nucleus	35.2	32.62
GSMUA_Achr2P11940_001	Banana	nucleus	33.22	31.76
VIT_19s0014g02350.t01	Wine grape	nucleus	21.05	31.37
VIT_04s0210g00170.t01	Wine grape	nucleus	20.07	29.47
TraesCS7D01G482300.1	Wheat	nucleus	28.95	27.76
TraesCS7D01G482400.1	Wheat	nucleus	30.26	23.71
Zm00001d002005_P001	Maize	nucleus	30.59	23.31
TraesCS7D01G482500.1	Wheat	nucleus	31.58	23.08
EES11579	Sorghum	nucleus	30.26	23.0
Zm00001d026491_P001	Maize	nucleus	29.93	22.98
TraesCS7A01G495100.1	Wheat	nucleus	31.58	22.91
TraesCS2D01G502900.2	Wheat	nucleus	30.59	22.85
TraesCS7B01G402300.1	Wheat	nucleus	29.28	22.82
TraesCS2B01G530400.1	Wheat	nucleus	30.59	22.79
TraesCS7B01G402200.1	Wheat	nucleus	31.25	22.78
TraesCS7B01G402400.1	Wheat	nucleus	29.93	22.69
TraesCS7A01G495000.1	Wheat	nucleus	30.26	22.66
TraesCS6B01G180300.1	Wheat	nucleus	32.89	22.62
TraesCS7A01G494900.1	Wheat	nucleus	29.28	22.59
TraesCS2A01G502300.1	Wheat	nucleus	30.59	22.57
TraesCS6A01G152000.1	Wheat	nucleus	33.22	22.54
Zm00001d053756_P001	Maize	nucleus	29.93	22.41
Zm00001d046906_P001	Maize	nucleus	31.25	22.41
Os04t0656500-01	Rice	nucleus	30.59	22.36
TraesCS6D01G142100.1	Wheat	nucleus	33.22	22.35
Zm00001d015451_P001	Maize	nucleus	32.24	22.22
TraesCS7A01G494800.1	Wheat	nucleus	28.95	22.06
EER88765	Sorghum	nucleus	31.91	21.85
Os06t0659100-00	Rice	nucleus	30.59	21.83
TraesCS7D01G482200.1	Wheat	nucleus	28.95	21.57
Zm00001d036692_P001	Maize	nucleus	30.59	21.43
OQU84482	Sorghum	nucleus	30.59	20.9
Os02t0177300-00	Rice	nucleus	31.25	20.3
HORVU7Hr1G110980.3	Barley	nucleus, plastid	29.61	20.04
HORVU6Hr1G030490.2	Barley	nucleus, plastid	32.24	19.96
VIT_15s0021g02290.t01	Wine grape	nucleus	25.33	19.3
VIT_08s0007g06270.t01	Wine grape	nucleus	24.01	19.26
VIT_17s0000g01260.t01	Wine grape	nucleus	24.01	18.2
VIT_14s0068g01780.t01	Wine grape	nucleus	22.04	17.72
VIT_11s0065g00170.t01	Wine grape	nucleus	26.32	17.2
VIT_01s0010g03910.t01	Wine grape	nucleus	21.71	16.97
VIT_01s0010g03710.t01	Wine grape	nucleus	25.33	16.14
VIT_01s0011g00130.t01	Wine grape	nucleus	24.67	14.79
VIT_17s0000g05020.t01	Wine grape	nucleus	25.99	14.18
HORVU2Hr1G111620.1	Barley	cytosol, nucleus	0.66	3.12

Protein Annotations

EntrezGene:100266738	wikigene:100266738	MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:CCB43856	ProteinID:CCB43856.1
UniProt:F6GV73	EMBL:FN594952	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	EntrezGene:LOC100266738	wikigene:LOC100266738	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251
PANTHER:PTHR31251:SF4	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	TIGR:TC60637	UniParc:UPI00015C9B82
ArrayExpress:VIT_15s0021g02300	EnsemblPlantsGene:VIT_15s0021g02300	EnsemblPlants:VIT_15s0021g02300.t01	unigene:Vvi.17573	RefSeq:XP_002277183	RefSeq:XP_002277183.1
RefSeq:XP_003633906	RefSeq:XP_003633906.1	RefSeq:XP_010661346.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:-:13256926..13258957

Molecular Weight (calculated)

34005.4 Da

IEP (calculated)

8.675

GRAVY (calculated)

-0.795

Length

304 amino acids

Sequence
(BLAST)

001: MLDYEWGNPS PIMLSGDEPP QDSDQTRQIF DHYHQTFTDG LVAPATAFFH HQSQPQPAHI HSLYDPRAYH TYQAPPPAML SLEPVAGTSA GGGTGFMVVP
101: KSEEMVPAAD FTARIGLNLG GRTYFSSEDD FVNRLYQRRS RPAEPGLTNS PRCQAEGCNA DLTHAKHYHR RHKVCEFHSK ASTVFAAGLT QRFCQQCSRF
201: HLLSEFDNGK RSCRKRLADH NRRRRKSQQP IQDNHKLHQH HLENARNSSS DNITRSPPDS GAHSSSSVTV AVSPPRMTLD CFRQRPYQTT ASSASSSSLF
301: FPSG

Best Arabidopsis Sequence Match ( AT1G02065.1 )
(BLAST)

001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG

Arabidopsis Description

SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.