Factsheet for VIT_01s0010g03910.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056374	Potato	nucleus	47.04	57.37
Solyc05g015840.2.1	Tomato	nucleus	45.5	56.73
VIT_17s0000g01260.t01	Wine grape	nucleus	49.1	47.63
VIT_14s0068g01780.t01	Wine grape	nucleus	41.13	42.33
CDX84872	Canola	nucleus	34.7	39.59
Bra022766.1-P	Field mustard	nucleus	34.7	39.47
CDY45826	Canola	nucleus	34.45	39.3
VIT_10s0003g00050.t01	Wine grape	nucleus	14.14	39.29
AT5G50670.2	Thale cress	nucleus	36.25	39.28
AT5G50570.2	Thale cress	nucleus	36.25	39.28
CDY34028	Canola	nucleus	34.45	38.51
CDX71667	Canola	nucleus	34.45	37.33
VIT_12s0028g03350.t01	Wine grape	nucleus	14.91	34.32
VIT_04s0210g00170.t01	Wine grape	nucleus	16.45	30.92
VIT_19s0014g02350.t01	Wine grape	nucleus	14.14	26.96
VIT_08s0007g06270.t01	Wine grape	nucleus	24.42	25.07
VIT_17s0000g05020.t01	Wine grape	nucleus	32.13	22.44
VIT_15s0021g02300.t01	Wine grape	nucleus	16.97	21.71
VIT_15s0021g02290.t01	Wine grape	nucleus	21.34	20.8
VIT_01s0010g03710.t01	Wine grape	nucleus	25.19	20.55
VIT_11s0065g00170.t01	Wine grape	nucleus	23.91	20.0
VIT_01s0011g00130.t01	Wine grape	nucleus	20.57	15.78

Protein Annotations

EntrezGene:100243827	wikigene:100243827	MapMan:15.5.18	Gene3D:4.10.1100.10	UniProt:A5BHV4	EMBL:AM459992
ProteinID:CAN63524	ProteinID:CAN63524.1	ProteinID:CCB51318	ProteinID:CCB51318.1	EMBL:FN595754	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	EntrezGene:LOC100243827	wikigene:LOC100243827
PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF29	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	TIGR:TC69080	UniParc:UPI0001520FD6	ArrayExpress:VIT_01s0010g03910	EnsemblPlantsGene:VIT_01s0010g03910	EnsemblPlants:VIT_01s0010g03910.t01
unigene:Vvi.14951	RefSeq:XP_002270226	RefSeq:XP_002270226.1	RefSeq:XP_010656129.1	RefSeq:XP_019077816.1	SEG:seg

Description

No Description!

Coordinates

chr1:-:21412823..21416284

Molecular Weight (calculated)

41867.1 Da

IEP (calculated)

9.002

GRAVY (calculated)

-0.564

Length

389 amino acids

Sequence
(BLAST)

001: MGYNLKTPSW DLAELQKEGI PSVAPFLGSS SSLGGGQETK GDCLVDLKLG RLSDLGDGSV NSFKSSMMES SSSGSAKRAR TPGHGTQVVS CLVDGCKSDL
101: SKCRDYHRRH KVCELHSKTA KVTIGGHEQR FCQQCSRFHS LGEFDEGKRS CRKRLDGHNR RRRKPQPEPL SITSGRFLSS HQGTRLLAFS NPQVFPASAG
201: VTSAWAGNIK TENDAVLYNS HQQLNFMDRQ NSFPESFSRS YRGKQFPFLQ GPNPTLPGTS VCQPLLDPSS ASGNGSGGQK MFSDGLNRVI SSDRALSLLS
301: SPPPETQEIG LSRMVQQNPI PPAQSLIPSL HYTGLSQYAS SQGMGGSVGS VLVSDGSSNA NLHCPAIFQL GPDGSSTNSP HQTLSFSWE

Best Arabidopsis Sequence Match ( AT5G50670.2 )
(BLAST)

001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE

Arabidopsis Description

SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.