Factsheet for VIT_04s0210g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g00050.t01	Wine grape	nucleus	29.47	43.57
KRH28893	Soybean	nucleus	27.05	38.36
VIT_12s0028g03350.t01	Wine grape	nucleus	28.99	35.5
VIT_19s0014g02350.t01	Wine grape	nucleus	32.85	33.33
VIT_15s0021g02300.t01	Wine grape	nucleus	29.47	20.07
VIT_01s0010g03910.t01	Wine grape	nucleus	30.92	16.45
VIT_14s0068g01780.t01	Wine grape	nucleus	29.47	16.14
VIT_17s0000g01260.t01	Wine grape	nucleus	30.43	15.71
VIT_15s0021g02290.t01	Wine grape	nucleus	29.47	15.29
VIT_08s0007g06270.t01	Wine grape	nucleus	27.05	14.78
VIT_11s0065g00170.t01	Wine grape	nucleus	28.99	12.9
VIT_17s0000g05020.t01	Wine grape	nucleus	33.82	12.57
VIT_01s0010g03710.t01	Wine grape	nucleus	27.05	11.74
VIT_01s0011g00130.t01	Wine grape	nucleus	27.05	11.05

Protein Annotations

EntrezGene:100257602	MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:CBI38411	ProteinID:CBI38411.3	ncoils:Coil
UniProt:D7U6P1	EMBL:FN596531	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	UniParc:UPI00015CE2F4	ArrayExpress:VIT_04s0210g00170	EnsemblPlantsGene:VIT_04s0210g00170	EnsemblPlants:VIT_04s0210g00170.t01	RefSeq:XP_002266632
RefSeq:XP_002266632.2	RefSeq:XP_010649307.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:20536311..20537901

Molecular Weight (calculated)

24336.9 Da

IEP (calculated)

6.322

GRAVY (calculated)

-1.472

Length

207 amino acids

Sequence
(BLAST)

001: MAKRSLEIKR EYERQEEYET EDEVGESEND DETVDYGGGG DGVEEEEEEE EQEEREEEVE DRRKRALIRI VSGQRRGVPS NTLCCQADDC GVDLRAAKRY
101: HRRHKVCERH AKAAFVFLGG IEQRFCQQCS RFHEISQFDD TKRSCRKRLA GHNQRRRKNQ PDPPHTEDRR KPPNSKMNAS SLKATEHSDD NELSFRGQSN
201: IRHFRIR

Best Arabidopsis Sequence Match ( AT3G60030.1 )
(BLAST)

001: MEARIEGEVE GHSLEYGFSG KRSVEWDLND WKWNGDLFVA TQLNHGSSNS SSTCSDEGNV EIMERRRIEM EKKKKRRAVT VVAMEEDNLK DDDAHRLTLN
101: LGGNNIEGNG VKKTKLGGGI PSRAICCQVD NCGADLSKVK DYHRRHKVCE IHSKATTALV GGIMQRFCQQ CSRFHVLEEF DEGKRSCRRR LAGHNKRRRK
201: ANPDTIGNGT SMSDDQTSNY MLITLLKILS NIHSNQSDQT GDQDLLSHLL KSLVSQAGEH IGRNLVGLLQ GGGGLQASQN IGNLSALLSL EQAPREDIKH
301: HSVSETPWQE VYANSAQERV APDRSEKQVK VNDFDLNDIY IDSDDTTDIE RSSPPPTNPA TSSLDYHQDS RQSSPPQTSR RNSDSASDQS PSSSSGDAQS
401: RTDRIVFKLF GKEPNDFPVA LRGQILNWLA HTPTDMESYI RPGCIVLTIY LRQDEASWEE LCCDLSFSLR RLLDLSDDPL WTDGWLYLRV QNQLAFAFNG
501: QVVLDTSLPL RSHDYSQIIT VRPLAVTKKA QFTVKGINLR RPGTRLLCTV EGTHLVQEAT QGGMEERDDL KENNEIDFVN FSCEMPIASG RGFMEIEDQG
601: GLSSSFFPFI VSEDEDICSE IRRLESTLEF TGTDSAMQAM DFIHEIGWLL HRSELKSRLA ASDHNPEDLF SLIRFKFLIE FSMDREWCCV MKKLLNILFE
701: EGTVDPSPDA ALSELCLLHR AVRKNSKPMV EMLLRFSPKK KNQTLAGLFR PDAAGPGGLT PLHIAAGKDG SEDVLDALTE DPGMTGIQAW KNSRDNTGFT
801: PEDYARLRGH FSYIHLVQRK LSRKPIAKEH VVVNIPESFN IEHKQEKRSP MDSSSLEITQ INQCKLCDHK RVFVTTHHKS VAYRPAMLSM VAIAAVCVCV
901: ALLFKSCPEV LYVFQPFRWE LLEYGTS

Arabidopsis Description

SPL12Uncharacterized protein At3g60030 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.