Factsheet for VIT_08s0007g06270.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95361	Soybean	nucleus	58.58	61.84
Solyc10g078700.1.1	Tomato	nucleus	60.69	61.83
KRH67040	Soybean	nucleus	59.63	61.58
PGSC0003DMT400029751	Potato	nucleus	59.89	61.02
KRH38141	Soybean	nucleus, plastid	56.46	57.37
KRH71914	Soybean	nucleus, plastid	51.19	54.19
GSMUA_Achr4P03880_001	Banana	nucleus	38.52	51.23
GSMUA_Achr9P22260_001	Banana	nucleus	45.65	50.44
GSMUA_Achr7P20510_001	Banana	nucleus	44.59	49.56
CDX79888	Canola	nucleus	46.7	48.1
AT2G42200.1	Thale cress	nucleus	46.97	47.47
CDY06881	Canola	nucleus	45.12	47.11
Bra016891.1-P	Field mustard	nucleus	44.85	46.83
CDY53504	Canola	nucleus	45.65	46.76
Bra004674.1-P	Field mustard	nucleus	45.38	46.61
CDY14818	Canola	nucleus	45.12	46.59
VIT_10s0003g00050.t01	Wine grape	nucleus	17.15	46.43
CDX98259	Canola	nucleus	38.52	44.92
CDX67715	Canola	nucleus	37.2	44.62
Bra003305.1-P	Field mustard	nucleus	37.2	44.62
CDY61750	Canola	nucleus	36.15	44.48
CDY47656	Canola	nucleus	37.47	43.83
AT3G57920.1	Thale cress	nucleus	40.9	43.79
GSMUA_Achr9P20220_001	Banana	nucleus	27.97	43.09
Bra014599.1-P	Field mustard	nucleus	33.77	42.38
GSMUA_Achr6P22280_001	Banana	nucleus	44.33	40.88
GSMUA_Achr8P25550_001	Banana	nucleus	34.04	37.5
VIT_12s0028g03350.t01	Wine grape	nucleus	16.62	37.28
GSMUA_Achr7P02020_001	Banana	nucleus	33.25	36.42
GSMUA_Achr4P01450_001	Banana	nucleus	33.51	35.57
GSMUA_Achr9P27660_001	Banana	nucleus	33.25	34.15
GSMUA_Achr3P11170_001	Banana	nucleus	34.3	33.51
VIT_19s0014g02350.t01	Wine grape	nucleus	17.94	33.33
TraesCS7B01G144900.1	Wheat	nucleus	33.77	33.16
TraesCS7D01G245200.2	Wheat	nucleus	33.25	32.73
TraesCS7A01G246500.1	Wheat	nucleus	33.25	32.64
TraesCS5B01G265600.2	Wheat	nucleus	34.04	32.58
TraesCS5D01G273900.2	Wheat	nucleus	34.3	31.86
Zm00001d020941_P001	Maize	nucleus	31.66	31.75
EER99092	Sorghum	nucleus	32.45	31.7
TraesCS5A01G265900.2	Wheat	nucleus	34.3	31.63
Os09t0491532-01	Rice	nucleus	26.91	31.58
Zm00001d006028_P001	Maize	nucleus	31.13	30.81
HORVU5Hr1G073440.7	Barley	nucleus	33.77	30.77
EES14266	Sorghum	nucleus	32.45	30.07
Zm00001d052890_P001	Maize	nucleus	31.66	29.41
Zm00001d031451_P001	Maize	nucleus	31.13	29.28
Os08t0509600-01	Rice	nucleus	31.13	28.3
VIT_04s0210g00170.t01	Wine grape	nucleus	14.78	27.05
VIT_11s0065g00170.t01	Wine grape	nucleus	30.08	24.52
VIT_01s0010g03910.t01	Wine grape	nucleus	25.07	24.42
VIT_15s0021g02300.t01	Wine grape	nucleus	19.26	24.01
VIT_01s0010g03710.t01	Wine grape	nucleus	30.08	23.9
VIT_14s0068g01780.t01	Wine grape	nucleus	23.48	23.55
VIT_15s0021g02290.t01	Wine grape	nucleus	23.75	22.56
VIT_17s0000g01260.t01	Wine grape	nucleus	23.48	22.19
VIT_17s0000g05020.t01	Wine grape	nucleus	26.91	18.31
VIT_01s0011g00130.t01	Wine grape	nucleus	21.9	16.37

Protein Annotations

EntrezGene:100253723	wikigene:100253723	MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:ADG36380	ProteinID:ADG36380.1
EMBL:AM469269	ProteinID:CAN63786	ProteinID:CAN63786.1	ProteinID:CCB55260	ProteinID:CCB55260.1	UniProt:F6HLK4
EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	EMBL:HM018600	InterPro:IPR004333
InterPro:IPR036893	EntrezGene:LOC100253723	wikigene:LOC100253723	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251
PANTHER:PTHR31251:SF56	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	TIGR:TC56619	UniParc:UPI00021087FD
ArrayExpress:VIT_08s0007g06270	EnsemblPlantsGene:VIT_08s0007g06270	EnsemblPlants:VIT_08s0007g06270.t01	unigene:Vvi.16055	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:20046458..20050995

Molecular Weight (calculated)

40423.8 Da

IEP (calculated)

9.473

GRAVY (calculated)

-0.697

Length

379 amino acids

Sequence
(BLAST)

001: MERGSSSLTV SSSSANSSES LNGLKFGQKI YFEDLGVGAP AKSGTGSSSS SSAAGSGGRP PPAPPKKVRG SGVVQGGQPP RCQVEGCKVD LSDAKAYYSR
101: HKVCGMHSKS PTVIVAGLEQ RFCQQCSRFH QLAEFDQGKR SCRRRLAGHN ERRRKPPPGS LLSSRYGRLS SSIFENSSRV GGGFLMDFAA YPRHPERDTW
201: PTTRASDRVP GNQTTAMGRF LPHPWQSNSE NPLFLQGSAG GTSFHGPGIP SGECFTGASD SSCALSLLSN QPWSSRNRAS GLGANSFMNP EGASMAQPTA
301: PHSAAINHFP STSWDFKGNE GSSSSQEMPP DLGLGQISQP INSQFSGGGE LPQQSGRQYM ELEHSRAYDS STQQMHWSL

Best Arabidopsis Sequence Match ( AT2G42200.1 )
(BLAST)

001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL

Arabidopsis Description

SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.