Factsheet for Bra016891.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06881	Canola	nucleus	98.62	98.62
CDY14818	Canola	nucleus	97.52	96.46
Bra004674.1-P	Field mustard	nucleus	88.15	86.72
AT2G42200.1	Thale cress	nucleus	86.78	84.0
Bra003305.1-P	Field mustard	nucleus	46.01	52.85
Bra014599.1-P	Field mustard	nucleus	40.22	48.34
VIT_08s0007g06270.t01	Wine grape	nucleus	46.83	44.85
KRH67040	Soybean	nucleus	43.25	42.78
KRG95361	Soybean	nucleus	41.32	41.78
KRH38141	Soybean	nucleus, plastid	40.5	39.41
KRH71914	Soybean	nucleus, plastid	38.57	39.11
Bra021880.1-P	Field mustard	nucleus	15.15	39.01
Bra005470.1-P	Field mustard	nucleus	15.15	38.73
GSMUA_Achr4P03880_001	Banana	nucleus	29.75	37.89
GSMUA_Achr7P20510_001	Banana	nucleus	34.71	36.95
PGSC0003DMT400029751	Potato	nucleus	37.47	36.56
Solyc10g078700.1.1	Tomato	nucleus	36.91	36.02
Bra032662.1-P	Field mustard	nucleus	14.88	34.18
GSMUA_Achr9P22260_001	Banana	nucleus	31.96	33.82
GSMUA_Achr8P25550_001	Banana	nucleus	31.96	33.72
Bra038101.1-P	Field mustard	nucleus	16.53	32.79
Bra021094.1-P	Field mustard	nucleus	15.7	32.39
Bra039656.1-P	Field mustard	nucleus	15.98	32.22
GSMUA_Achr4P01450_001	Banana	nucleus	30.85	31.37
GSMUA_Achr7P02020_001	Banana	nucleus	29.48	30.92
Bra027265.1-P	Field mustard	nucleus	15.15	30.73
Zm00001d020941_P001	Maize	nucleus	31.68	30.42
GSMUA_Achr6P22280_001	Banana	nucleus	33.88	29.93
Zm00001d006028_P001	Maize	nucleus	31.41	29.77
EER99092	Sorghum	nucleus	31.13	29.12
GSMUA_Achr3P11170_001	Banana	nucleus	30.58	28.61
GSMUA_Achr9P20220_001	Banana	nucleus	19.28	28.46
GSMUA_Achr9P27660_001	Banana	nucleus	28.93	28.46
TraesCS5B01G265600.2	Wheat	nucleus	30.58	28.03
Bra004363.1-P	Field mustard	nucleus	23.14	27.91
Os09t0491532-01	Rice	nucleus	24.79	27.86
TraesCS7B01G144900.1	Wheat	nucleus	29.48	27.72
TraesCS7D01G245200.2	Wheat	nucleus	29.2	27.53
TraesCS7A01G246500.1	Wheat	nucleus	29.2	27.46
TraesCS5D01G273900.2	Wheat	nucleus	30.85	27.45
TraesCS5A01G265900.2	Wheat	nucleus	30.85	27.25
EES14266	Sorghum	nucleus	30.3	26.89
Zm00001d031451_P001	Maize	nucleus	29.48	26.55
HORVU5Hr1G073440.7	Barley	nucleus	30.3	26.44
Zm00001d052890_P001	Maize	nucleus	29.48	26.23
Os08t0509600-01	Rice	nucleus	29.48	25.66
Bra038324.1-P	Field mustard	nucleus	22.59	25.15
Bra022766.1-P	Field mustard	nucleus	22.31	23.68
Bra033671.1-P	Field mustard	nucleus	22.59	22.65
Bra032823.1-P	Field mustard	nucleus	20.11	22.26
Bra027478.1-P	Field mustard	nucleus	23.42	21.79
Bra032822.1-P	Field mustard	nucleus	21.49	21.37
Bra010949.1-P	Field mustard	nucleus	21.21	21.04
Bra030040.1-P	Field mustard	nucleus	22.59	21.03
Bra033221.1-P	Field mustard	nucleus	18.73	20.73
Bra030041.1-P	Field mustard	nucleus	21.21	20.59

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EnsemblPlantsGene:Bra016891	EnsemblPlants:Bra016891.1	EnsemblPlants:Bra016891.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	UniProt:M4DK63	PFAM:PF03110
PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF62	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612
UniParc:UPI00025438D7	SEG:seg	:	:	:	:

Description

AT2G42200 (E=2e-147) SPL9 | SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9); transcription factor

Coordinates

chrA04:+:17734245..17736296

Molecular Weight (calculated)

39788.0 Da

IEP (calculated)

8.034

GRAVY (calculated)

-0.835

Length

363 amino acids

Sequence
(BLAST)

001: MNMGSNSGQG LGPGQAESGG SSNESSSFSG GLMFGQRIYF EDGGGGSSSS GGSNRRVRGG GSGQSSQIPR CQVEGCGVDL TNAKGYYLRH RVCGMHSKTP
101: RVIVAGIEQR FCQQCSRFHQ LQEFDLEKRS CRRRLAGHNE RRRKPQPASL SVLSSRYGRI APSLYGNAET TMNGSFLGSQ DMSWTSSRTL DTRVMRRPVA
201: TPSWQINPMD VFSQGSVSGG GGISFSSPEI MDTKPESYKG IGGDSNCALS LLSNPHQPAD NNNTWRTSSG FGPMTVTMAQ PPPAPSQHQY LNPPWVFKDD
301: DNNCPNDMSP VLNLARFTET DTTMGEFELS DHHHPQHQNR RQYMEDENTR AYDSSSHHNN WSL

Best Arabidopsis Sequence Match ( AT2G42200.1 )
(BLAST)

001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL

Arabidopsis Description

SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.