Factsheet for Bra021880.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37684	Canola	nucleus	97.87	97.87
AT2G33810.1	Thale cress	nucleus	75.89	81.68
Bra005470.1-P	Field mustard	nucleus	75.18	74.65
VIT_10s0003g00050.t01	Wine grape	nucleus	56.74	57.14
PGSC0003DMT400058753	Potato	nucleus	53.9	56.3
Solyc10g009080.2.1	Tomato	nucleus	52.48	54.81
PGSC0003DMT400076399	Potato	nucleus	52.48	54.41
Solyc02g077920.2.1	Tomato	nucleus	51.77	53.68
KRH21401	Soybean	nucleus	43.97	44.93
KRH10909	Soybean	nucleus	43.97	44.93
KRH20415	Soybean	nucleus	44.68	44.37
KRH50085	Soybean	nucleus	45.39	43.84
Bra038101.1-P	Field mustard	nucleus	48.23	37.16
Bra039656.1-P	Field mustard	nucleus	46.81	36.67
Bra027265.1-P	Field mustard	nucleus	45.39	35.75
Bra021094.1-P	Field mustard	nucleus	43.97	35.23
Bra032662.1-P	Field mustard	nucleus	36.88	32.91
Os07t0505200-01	Rice	nucleus	42.55	27.78
Zm00001d021573_P001	Maize	mitochondrion	40.43	27.67
EER97257	Sorghum	nucleus	41.84	27.44
KXG36284	Sorghum	nucleus	39.01	25.23
Zm00001d006451_P001	Maize	mitochondrion	41.13	22.83
Bra004363.1-P	Field mustard	nucleus	39.01	18.27
Bra038324.1-P	Field mustard	nucleus	39.72	17.18
Bra033221.1-P	Field mustard	nucleus	39.72	17.07
Bra014599.1-P	Field mustard	nucleus	32.62	15.23
Bra016891.1-P	Field mustard	nucleus	39.01	15.15
Bra032823.1-P	Field mustard	nucleus	34.75	14.94
Bra022766.1-P	Field mustard	nucleus	36.17	14.91
Bra004674.1-P	Field mustard	nucleus	39.01	14.91
Bra033671.1-P	Field mustard	nucleus	37.59	14.64
Bra003305.1-P	Field mustard	nucleus	31.91	14.24
Bra032822.1-P	Field mustard	nucleus	34.75	13.42
Bra027478.1-P	Field mustard	nucleus	36.17	13.08
Bra010949.1-P	Field mustard	nucleus	33.33	12.84
Bra030040.1-P	Field mustard	nucleus	35.46	12.82
Bra030041.1-P	Field mustard	nucleus	32.62	12.3

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EnsemblPlantsGene:Bra021880	EnsemblPlants:Bra021880.1	EnsemblPlants:Bra021880.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	UniProt:M4DZD3
PFAM:PF03110	PIRSF:PIRSF037575	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF62	InterPro:SBP_dom
InterPro:SBP_fam	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI00025436EF	SEG:seg	:

Description

AT2G33810 (E=1e-035) SPL3 | SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3); DNA binding / transcription factor

Coordinates

chrA04:+:15023517..15024029

Molecular Weight (calculated)

16483.8 Da

IEP (calculated)

6.668

GRAVY (calculated)

-1.523

Length

141 amino acids

Sequence
(BLAST)

001: MSTRRSRAEG KRSLREMSEE EEEDEEDEET FEGEEDEDTS EEEAVEKKQK GKATTSSSSG TGACQVERCT ADMSRAKQYH KRHRVCEFHA KAPLVRISGL
101: YQRFCQQCSR FHELGEFDDT KRSCRRRLAG HNERRRRNTS Q

Best Arabidopsis Sequence Match ( AT2G33810.1 )
(BLAST)

001: MSMRRSKAEG KRSLRELSEE EEEEEETEDE DTFEEEEALE KKQKGKATSS SGVCQVESCT ADMSKAKQYH KRHKVCQFHA KAPHVRISGL HQRFCQQCSR
101: FHALSEFDEA KRSCRRRLAG HNERRRKSTT D

Arabidopsis Description

SPL3Squamosa promoter-binding-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P93015]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.