Factsheet for Bra003305.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67715	Canola	nucleus	98.1	98.1
CDX98259	Canola	nucleus	95.57	92.92
Bra014599.1-P	Field mustard	nucleus	66.77	69.87
AT3G57920.1	Thale cress	nucleus	78.16	69.77
Bra016891.1-P	Field mustard	nucleus	52.85	46.01
Bra004674.1-P	Field mustard	nucleus	53.48	45.8
VIT_08s0007g06270.t01	Wine grape	nucleus	44.62	37.2
Bra005470.1-P	Field mustard	nucleus	15.51	34.51
KRH67040	Soybean	nucleus	39.87	34.33
KRG95361	Soybean	nucleus	38.61	33.98
Solyc10g078700.1.1	Tomato	nucleus	38.92	33.06
PGSC0003DMT400029751	Potato	nucleus	38.92	33.06
GSMUA_Achr4P03880_001	Banana	nucleus	28.8	31.93
Bra021880.1-P	Field mustard	nucleus	14.24	31.91
KRH38141	Soybean	nucleus, plastid	37.66	31.9
Bra032662.1-P	Field mustard	nucleus	15.82	31.65
GSMUA_Achr7P20510_001	Banana	nucleus	32.59	30.21
KRH71914	Soybean	nucleus, plastid	33.86	29.89
GSMUA_Achr9P22260_001	Banana	nucleus	31.65	29.15
Bra038101.1-P	Field mustard	nucleus	16.46	28.42
Bra021094.1-P	Field mustard	nucleus	15.82	28.41
GSMUA_Achr7P02020_001	Banana	nucleus	30.7	28.03
Bra039656.1-P	Field mustard	nucleus	15.82	27.78
GSMUA_Achr8P25550_001	Banana	nucleus	30.06	27.62
Bra027265.1-P	Field mustard	nucleus	15.19	26.82
GSMUA_Achr6P22280_001	Banana	nucleus	33.54	25.79
GSMUA_Achr4P01450_001	Banana	nucleus	29.11	25.77
GSMUA_Achr3P11170_001	Banana	nucleus	30.06	24.48
GSMUA_Achr9P20220_001	Banana	nucleus	18.99	24.39
GSMUA_Achr9P27660_001	Banana	nucleus	28.48	24.39
Zm00001d020941_P001	Maize	nucleus	28.8	24.07
Zm00001d006028_P001	Maize	nucleus	29.11	24.02
EER99092	Sorghum	nucleus	28.8	23.45
Bra004363.1-P	Field mustard	nucleus	22.15	23.26
TraesCS5B01G265600.2	Wheat	nucleus	29.11	23.23
TraesCS7D01G245200.2	Wheat	nucleus	28.16	23.12
TraesCS7B01G144900.1	Wheat	nucleus	28.16	23.06
TraesCS5A01G265900.2	Wheat	nucleus	29.43	22.63
TraesCS5D01G273900.2	Wheat	nucleus	29.11	22.55
Os08t0509600-01	Rice	nucleus	29.75	22.54
TraesCS7A01G246500.1	Wheat	nucleus	27.53	22.54
Zm00001d031451_P001	Maize	nucleus	28.48	22.33
HORVU5Hr1G073440.7	Barley	nucleus	29.11	22.12
Bra038324.1-P	Field mustard	nucleus	22.78	22.09
EES14266	Sorghum	nucleus	28.16	21.76
Os09t0491532-01	Rice	nucleus	22.15	21.67
Bra033671.1-P	Field mustard	nucleus	24.68	21.55
Zm00001d052890_P001	Maize	nucleus	27.22	21.08
Bra022766.1-P	Field mustard	nucleus	22.78	21.05
Bra027478.1-P	Field mustard	nucleus	25.63	20.77
Bra032823.1-P	Field mustard	nucleus	19.62	18.9
Bra033221.1-P	Field mustard	nucleus	18.99	18.29
Bra010949.1-P	Field mustard	nucleus	20.89	18.03
Bra030040.1-P	Field mustard	nucleus	21.84	17.69
Bra032822.1-P	Field mustard	nucleus	20.25	17.53
Bra030041.1-P	Field mustard	nucleus	19.94	16.84

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EnsemblPlantsGene:Bra003305	EnsemblPlants:Bra003305.1	EnsemblPlants:Bra003305.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	UniProt:M4CGH2	PFAM:PF03110
PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF62	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612
UniParc:UPI000254161C	SEG:seg	:	:	:	:

Description

AT3G57920 (E=5e-106) SPL15 | SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15); DNA binding / transcription factor

Coordinates

chrA07:-:12504302..12505548

Molecular Weight (calculated)

35206.1 Da

IEP (calculated)

9.500

GRAVY (calculated)

-0.686

Length

316 amino acids

Sequence
(BLAST)

001: MELLTGSGQN QPESAGSSST TLSGGLRFGQ KIYFEDGSGA GSSKNRVKST SRKLMTARCQ VEGCRMDLSN AKTYYSRHKV CCIHSKSSKV IVSGLHQRFH
101: QLSEFDLEKR SCRRRLACHN ERRRKPQATT TLLTSHYSPS LYGNAIRSVL GDPTRWSTTR GSAPWQSHQL MNVFSYGSSG FTNSTDSSCA LSLLSNYTNP
201: NQQEQQQLQT PTNTWRPSSI AADRVTMAQT PPVSVQNQYL NQTLEFMSGE KSNAQYTTPV LGLSQISEPV VDFQISNGAT MGGFELSLHQ QVLRQYMEPD
301: NTRAYDSSPQ HFNWSL

Best Arabidopsis Sequence Match ( AT3G57920.1 )
(BLAST)

001: MELLMCSGQA ESGGSSSTES SSLSGGLRFG QKIYFEDGSG SRSKNRVNTV RKSSTTARCQ VEGCRMDLSN VKAYYSRHKV CCIHSKSSKV IVSGLHQRFC
101: QQCSRFHQLS EFDLEKRSCR RRLACHNERR RKPQPTTALF TSHYSRIAPS LYGNPNAAMI KSVLGDPTAW STARSVMQRP GPWQINPVRE THPHMNVLSH
201: GSSSFTTCPE MINNNSTDSS CALSLLSNSY PIHQQQLQTP TNTWRPSSGF DSMISFSDKV TMAQPPPIST HQPPISTHQQ YLSQTWEVIA GEKSNSHYMS
301: PVSQISEPAD FQISNGTTMG GFELYLHQQV LKQYMEPENT RAYDSSPQHF NWSL

Arabidopsis Description

SPL15Squamosa promoter-binding-like protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Q6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.