Factsheet for Bra030041.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013973.1-P
Bra017443.1-P
Bra024875.1-P
Bra031991.1-P
Bra039762.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	Bra039762.1-P	AT1G66350.1	22942378
AT1G27360.1	Bra017443.1-P	AT2G01570.1	22942378
AT1G27360.1	Bra024875.1-P	AT2G01570.1	22942378
AT1G27360.1	Bra031991.1-P	AT3G03450.1	22942378
AT1G27360.1	Bra013973.1-P	AT5G17490.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15712	Canola	nucleus	99.47	99.47
Bra010949.1-P	Field mustard	nucleus	72.73	74.32
Bra032823.1-P	Field mustard	nucleus	64.17	73.17
Bra030040.1-P	Field mustard	nucleus	72.19	69.23
AT1G27360.1	Thale cress	nucleus	68.98	65.65
Bra032822.1-P	Field mustard	nucleus	63.9	65.48
Os02t0139400-01	Rice	nucleus	29.14	38.65
Bra005470.1-P	Field mustard	nucleus	13.64	35.92
Bra027478.1-P	Field mustard	nucleus	35.29	33.85
Bra033671.1-P	Field mustard	nucleus	32.62	33.7
Os02t0174100-02	Rice	nucleus	21.93	32.67
Bra021880.1-P	Field mustard	nucleus	12.3	32.62
KRG97402	Soybean	nucleus	37.43	32.33
Bra032662.1-P	Field mustard	nucleus	13.64	32.28
KRH31506	Soybean	nucleus	37.7	31.83
GSMUA_Achr9P14160_001	Banana	nucleus	35.56	29.04
GSMUA_Achr5P22630_001	Banana	nucleus	34.76	28.63
GSMUA_Achr4P05720_001	Banana	nucleus	26.47	28.61
GSMUA_Achr9P23140_001	Banana	nucleus	31.82	28.61
VIT_11s0065g00170.t01	Wine grape	nucleus	35.29	28.39
GSMUA_Achr6P36010_001	Banana	nucleus	33.16	28.31
GSMUA_Achr5P21990_001	Banana	nucleus	32.62	28.18
TraesCS6A01G155300.1	Wheat	nucleus	24.6	28.05
GSMUA_Achr4P12470_001	Banana	nucleus	26.2	28.0
TraesCS6D01G145200.1	Wheat	nucleus	24.33	28.0
Bra038101.1-P	Field mustard	nucleus	13.64	27.87
TraesCS6B01G183400.1	Wheat	nucleus	24.33	27.83
Zm00001d053775_P001	Maize	nucleus	24.6	27.79
Bra039656.1-P	Field mustard	nucleus	13.37	27.78
HORVU6Hr1G031450.6	Barley	nucleus	24.06	27.61
Zm00001d015410_P002	Maize	nucleus	24.33	27.41
Bra027265.1-P	Field mustard	nucleus	13.1	27.37
Bra021094.1-P	Field mustard	nucleus	12.83	27.27
GSMUA_Achr3P05360_001	Banana	nucleus	33.69	27.16
GSMUA_Achr3P27750_001	Banana	nucleus	33.96	27.08
EES04609	Sorghum	nucleus	24.33	27.0
TraesCS6D01G098500.1	Wheat	nucleus	33.42	26.43
TraesCS6B01G138400.1	Wheat	nucleus	33.16	26.22
GSMUA_Achr10P...	Banana	nucleus	35.03	25.99
Os06t0703500-02	Rice	nucleus	32.89	25.89
TraesCS6A01G110100.2	Wheat	nucleus	32.89	25.89
OQU77017	Sorghum	nucleus	29.95	25.45
Os06t0663500-00	Rice	nucleus	23.26	25.36
Zm00001d014698_P001	Maize	nucleus	29.68	25.28
GSMUA_Achr10P...	Banana	nucleus	32.35	24.85
EES04495	Sorghum	nucleus	31.82	24.79
HORVU6Hr1G019700.3	Barley	nucleus	33.16	24.46
Bra004363.1-P	Field mustard	nucleus	19.25	23.92
Zm00001d053890_P003	Maize	nucleus	29.95	23.24
Bra038324.1-P	Field mustard	nucleus	19.79	22.7
GSMUA_Achr8P23820_001	Banana	nucleus	31.55	22.39
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	31.55	22.22
Bra022766.1-P	Field mustard	nucleus	19.79	21.64
Bra016891.1-P	Field mustard	nucleus	20.59	21.21
Bra033221.1-P	Field mustard	nucleus	18.45	21.04
Bra004674.1-P	Field mustard	nucleus	20.59	20.87
Bra003305.1-P	Field mustard	nucleus	16.84	19.94
Bra014599.1-P	Field mustard	nucleus	15.78	19.54

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EnsemblPlantsGene:Bra030041	EnsemblPlants:Bra030041.1	EnsemblPlants:Bra030041.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	UniProt:M4EMM1	PFAM:PF03110
PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF62	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612
UniParc:UPI00025411B4	SEG:seg	:	:	:	:

Description

AT1G27370 (E=3e-119) | squamosa promoter-binding protein-like 10 (SPL10)

Coordinates

chrA07:+:6997842..6999217

Molecular Weight (calculated)

41577.5 Da

IEP (calculated)

7.944

GRAVY (calculated)

-0.666

Length

374 amino acids

Sequence
(BLAST)

001: MDCNMVSPLW DWEHLIIPNL SKTETDKKQP STTDWDIEKG EGIESILFPS FTGSSSTTGF LSSQLTSTNS SSPKLKSSLG DFDQVKASTA LQVVSAESDL
101: CLKLGKRSYS DEETWGRNNN NDISAAVSVK LLTPPSVVAL KKSKSSCGQS MQVPRCQIDG CELDLSSAKD YHRKHRVCES HSKCPVVTVG GFERRFCQQC
201: SRLHAVSEFD EKKRSCRKRL SHHNARRRKP QGMFPLNPER VYNGRQHTNM LWNELSLNTG SEEKYAWGTT TYETKPTQME SGFTLNFQRG SGAEEQQVFA
301: SSNLSFSAYQ TSAGKSNVQL PSKGVGEYSG GLYETQDFYS ALSLLSTSSD SHGTKHHPMV ESQPIHGIFP THFL

Best Arabidopsis Sequence Match ( AT1G27370.1 )
(BLAST)

001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI

Arabidopsis Description

SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.