Factsheet for Bra031991.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001477.1-P
Bra003520.1-P
Bra007722.1-P
Bra009970.1-P
Bra012532.1-P
Bra013423.1-P
Bra027588.1-P
Bra028364.1-P
Bra034718.1-P
Bra035092.1-P
Bra039354.1-P
Bra039460.1-P
Bra039533.1-P
Bra040420.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03450.1	Bra035092.1-P	AT1G79110.1	23482857
AT3G03450.1	Bra039460.1-P	AT3G05120.1	16709201
AT3G03450.1	Bra039460.1-P	AT3G05120.1	19500306
AT3G03450.1	Bra001477.1-P	AT3G12920.1	23482857
AT3G03450.1	Bra034718.1-P	AT3G12920.1	23482857
AT3G03450.1	Bra039354.1-P	AT3G12920.1	23482857
AT3G03450.1	Bra003520.1-P	AT3G63010.1	16709201
AT3G03450.1	Bra007722.1-P	AT3G63010.1	16709201
AT3G03450.1	Bra040420.1-P	AT3G63010.1	16709201
AT3G03450.1	Bra003520.1-P	AT3G63010.1	19500306
AT3G03450.1	Bra007722.1-P	AT3G63010.1	19500306
AT3G03450.1	Bra040420.1-P	AT3G63010.1	19500306
AT3G03450.1	Bra012532.1-P	AT4G19700.1	23482857
AT3G03450.1	Bra013423.1-P	AT4G19700.1	23482857
AT3G03450.1	Bra009970.1-P	AT5G27320.1	16709201
AT3G03450.1	Bra009970.1-P	AT5G27320.1	19500306
AT3G03450.1	Bra027588.1-P	AT5G45100.1	23482857
AT3G03450.1	Bra028364.1-P	AT5G45100.1	23482857
AT3G03450.1	Bra039533.1-P	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50707	Canola	cytosol, nucleus, plastid	70.69	85.82
CDY43122	Canola	nucleus	70.5	85.37
AT3G03450.1	Thale cress	nucleus	81.39	75.14
Bra013973.1-P	Field mustard	cytosol	65.35	62.86
Bra039762.1-P	Field mustard	cytosol	58.42	60.45
KRG97933	Soybean	nucleus	63.76	55.14
VIT_14s0006g00640.t01	Wine grape	cytosol	61.58	54.66
KRH30942	Soybean	cytosol	63.76	54.12
Solyc11g011260.1.1	Tomato	nucleus	59.8	51.36
PGSC0003DMT400040589	Potato	nucleus	59.8	51.36
Bra024875.1-P	Field mustard	nucleus	57.82	50.96
Bra017443.1-P	Field mustard	cytosol	51.68	47.71
Bra007056.1-P	Field mustard	mitochondrion, plastid	20.2	32.28
Bra025456.1-P	Field mustard	mitochondrion	15.05	30.89
Bra014251.1-P	Field mustard	cytosol	23.96	27.19
Bra018848.1-P	Field mustard	cytosol	23.56	27.05
Bra012102.1-P	Field mustard	cytosol	8.91	26.79
Bra038002.1-P	Field mustard	nucleus, plastid	23.17	26.41
Bra027620.1-P	Field mustard	plastid	25.74	20.57
Bra026999.1-P	Field mustard	nucleus, plastid	23.76	19.9

Protein Annotations

Gene3D:1.10.10.1290	MapMan:15.5.12	EnsemblPlantsGene:Bra031991	EnsemblPlants:Bra031991.1	EnsemblPlants:Bra031991.1-P	InterPro:DELLA_N_sf
GO:GO:0000989	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003712	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009737	GO:GO:0009739	GO:GO:0009791	GO:GO:0009987	GO:GO:0010187	GO:GO:0043565
InterPro:IPR005202	InterPro:IPR038088	UniProt:M4ET61	PFAM:PF03514	PFAM:PF12041	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF47	SMART:SM01129	InterPro:TF_DELLA	InterPro:TF_DELLA_N	InterPro:TF_GRAS
UniParc:UPI0002546337	SEG:seg	:	:	:	:

Description

AT1G66350 (E=3e-153) RGL1, RGL | RGL1 (RGA-LIKE 1); transcription factor

Coordinates

chrA02:-:26760620..26762249

Molecular Weight (calculated)

54632.2 Da

IEP (calculated)

4.458

GRAVY (calculated)

-0.231

Length

505 amino acids

Sequence
(BLAST)

001: MKRGHGETWD PAPQSQQPSG SCEGSSSVVD NIKGKMADDS NMDELLEVLG YKVRSSEMAE VAQKLEQLEM VLSNDDVGST VLNDTVHYNP SDLSNWVETM
101: LSELNNPEPS DLDPTRICED RSEYGLSAIP GLSAFPKAEE GAEEEASSKR IRLESVGSWG ELTRPVVVVD SQETGVRLVH ALVACAEAIQ QQDLNLADAL
201: VKSVGTLAAS QAGAMGKVAT YFAQGLARRI YAADLSGGSS VGPSFEEALQ MHFYESCPYL KFAHFTANQA ILEAVTTARR VHVIDLGLNQ GMQWPALMQA
301: LAVRPGGPPS FRLTGVGPPQ TESSDSLQQL GWKLAQFAQA IGVEFEFKGL AAESLSRTGD VRDPARIGNI SEANHNGVVF LDRFNEALHY YSSLFDSLED
401: SYTLPSQDRV MSEVYLGRQI VNVVAAEGTD RVERHETLAQ WKARMGSVGF DPVPLGSSAF KQASMLLSVF AGGDGYRVEE NDGCLMLGWQ TRPLIATSAW
501: KLAGA

Best Arabidopsis Sequence Match ( AT3G03450.1 )
(BLAST)

001: MKRGYGETWD PPPKPLPASR SGEGPSMADK KKADDDNNNS NMDDELLAVL GYKVRSSEMA EVAQKLEQLE MVLSNDDVGS TVLNDSVHYN PSDLSNWVES
101: MLSELNNPAS SDLDTTRSCV DRSEYDLRAI PGLSAFPKEE EVFDEEASSK RIRLGSWCES SDESTRSVVL VDSQETGVRL VHALVACAEA IHQENLNLAD
201: ALVKRVGTLA GSQAGAMGKV ATYFAQALAR RIYRDYTAET DVCAAVNPSF EEVLEMHFYE SCPYLKFAHF TANQAILEAV TTARRVHVID LGLNQGMQWP
301: ALMQALALRP GGPPSFRLTG IGPPQTENSD SLQQLGWKLA QFAQNMGVEF EFKGLAAESL SDLEPEMFET RPESETLVVN SVFELHRLLA RSGSIEKLLN
401: TVKAIKPSIV TVVEQEANHN GIVFLDRFNE ALHYYSSLFD SLEDSYSLPS QDRVMSEVYL GRQILNVVAA EGSDRVERHE TAAQWRIRMK SAGFDPIHLG
501: SSAFKQASML LSLYATGDGY RVEENDGCLM IGWQTRPLIT TSAWKLA

Arabidopsis Description

RGL2RGL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VH73]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.