Factsheet for Bra017443.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001477.1-P
Bra003520.1-P
Bra004674.1-P
Bra007722.1-P
Bra008624.1-P
Bra009970.1-P
Bra012532.1-P
Bra013423.1-P
Bra013776.1-P
Bra016891.1-P
Bra021172.1-P
Bra027180.1-P
Bra027588.1-P
Bra028364.1-P
Bra029516.1-P
Bra030040.1-P
Bra034718.1-P
Bra035092.1-P
Bra038128.1-P
Bra039354.1-P
Bra039460.1-P
Bra039533.1-P
Bra039676.1-P
Bra040420.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01570.1	Bra030040.1-P	AT1G27370.1	22942378
AT2G01570.1	Bra038128.1-P	AT1G53510.1	21798944
AT2G01570.1	Bra039676.1-P	AT1G53510.1	21798944
AT2G01570.1	Bra035092.1-P	AT1G79110.1	23482857
AT2G01570.1	Bra004674.1-P	AT2G42200.1	22942378
AT2G01570.1	Bra016891.1-P	AT2G42200.1	22942378
AT2G01570.1	Bra039460.1-P	AT3G05120.1	16709201
AT2G01570.1	Bra039460.1-P	AT3G05120.1	17194763
AT2G01570.1	Bra039460.1-P	AT3G05120.1	17416730
AT2G01570.1	Bra039460.1-P	AT3G05120.1	19500306
AT2G01570.1	Bra001477.1-P	AT3G12920.1	23482857
AT2G01570.1	Bra034718.1-P	AT3G12920.1	23482857
AT2G01570.1	Bra039354.1-P	AT3G12920.1	23482857
AT2G01570.1	Bra021172.1-P	AT3G16250.1	21798944
AT2G01570.1	Bra027180.1-P	AT3G16250.1	21798944
AT2G01570.1	Bra003520.1-P	AT3G63010.1	16709201
AT2G01570.1	Bra007722.1-P	AT3G63010.1	16709201
AT2G01570.1	Bra040420.1-P	AT3G63010.1	16709201
AT2G01570.1	Bra003520.1-P	AT3G63010.1	17194763
AT2G01570.1	Bra007722.1-P	AT3G63010.1	17194763
AT2G01570.1	Bra040420.1-P	AT3G63010.1	17194763
AT2G01570.1	Bra003520.1-P	AT3G63010.1	18827182
AT2G01570.1	Bra007722.1-P	AT3G63010.1	18827182
AT2G01570.1	Bra040420.1-P	AT3G63010.1	18827182
AT2G01570.1	Bra003520.1-P	AT3G63010.1	19429606
AT2G01570.1	Bra007722.1-P	AT3G63010.1	19429606
AT2G01570.1	Bra040420.1-P	AT3G63010.1	19429606
AT2G01570.1	Bra003520.1-P	AT3G63010.1	19500306
AT2G01570.1	Bra007722.1-P	AT3G63010.1	19500306
AT2G01570.1	Bra040420.1-P	AT3G63010.1	19500306
AT2G01570.1	Bra029516.1-P	AT4G04770.1	21798944
AT2G01570.1	Bra012532.1-P	AT4G19700.1	23482857
AT2G01570.1	Bra013423.1-P	AT4G19700.1	23482857
AT2G01570.1	Bra013776.1-P	AT4G24210.1	15155881
AT2G01570.1	Bra013776.1-P	AT4G24210.1	15161962
AT2G01570.1	Bra008624.1-P	AT5G16320.1	21798944
AT2G01570.1	Bra009970.1-P	AT5G27320.1	16709201
AT2G01570.1	Bra009970.1-P	AT5G27320.1	17194763
AT2G01570.1	Bra009970.1-P	AT5G27320.1	19500306
AT2G01570.1	Bra027588.1-P	AT5G45100.1	23482857
AT2G01570.1	Bra028364.1-P	AT5G45100.1	23482857
AT2G01570.1	Bra039533.1-P	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04092	Canola	cytosol	95.61	97.94
CDY64837	Canola	cytosol	96.71	97.6
Bra024875.1-P	Field mustard	nucleus	82.63	78.88
AT2G01570.1	Thale cress	mitochondrion, nucleus	84.64	78.88
KRH58636	Soybean	nucleus	62.16	65.01
KRH42544	Soybean	cytosol, nucleus, plastid	61.43	64.99
VIT_01s0011g05260.t01	Wine grape	cytosol	63.44	58.81
Bra039762.1-P	Field mustard	cytosol	51.92	58.2
Bra013973.1-P	Field mustard	cytosol	50.27	52.38
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	47.71	51.68
GSMUA_Achr8P18250_001	Banana	cytosol	44.42	50.73
GSMUA_Achr10P...	Banana	cytosol	42.96	49.16
TraesCS4A01G466700.1	Wheat	cytosol, nucleus, peroxisome	29.07	48.77
Zm00001d033680_P001	Maize	nucleus	54.3	47.14
TraesCS4D01G040400.1	Wheat	cytosol	53.56	47.03
HORVU4Hr1G006930.1	Barley	nucleus	53.02	46.93
EER93592	Sorghum	cytosol	53.75	46.89
Os03t0707600-01	Rice	nucleus	53.56	46.88
TraesCS4B01G043100.1	Wheat	cytosol	53.2	46.86
Zm00001d013465_P001	Maize	cytosol	53.38	46.72
TraesCS4A01G271000.1	Wheat	cytosol	52.83	46.61
GSMUA_Achr1P21300_001	Banana	nucleus	42.23	44.77
Bra007056.1-P	Field mustard	mitochondrion, plastid	19.2	33.23
Bra025456.1-P	Field mustard	mitochondrion	13.35	29.67
Bra014251.1-P	Field mustard	cytosol	23.58	28.99
Bra018848.1-P	Field mustard	cytosol	23.03	28.64
Bra038002.1-P	Field mustard	nucleus, plastid	20.29	25.06
Bra027620.1-P	Field mustard	plastid	25.96	22.47
Bra026999.1-P	Field mustard	nucleus, plastid	24.31	22.06
Bra012102.1-P	Field mustard	cytosol	6.76	22.02

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	ProteinID:AAO22521	ProteinID:AAO22521.1
EMBL:AY176677	EnsemblPlantsGene:Bra017443	EnsemblPlants:Bra017443.1	EnsemblPlants:Bra017443.1-P	ncoils:Coil	InterPro:DELLA_N_sf
GO:GO:0000989	GO:GO:0003674	GO:GO:0003712	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:IPR038088	UniProt:M4DLR2	PFAM:PF03514
PFAM:PF12041	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF47	SMART:SM01129	InterPro:TF_DELLA
InterPro:TF_DELLA_N	InterPro:TF_GRAS	UniParc:UPI0002542343	SEG:seg	:	:

Description

AT2G01570 (E=4e-240) RGA1, RGA | RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor

Coordinates

chrA09:+:15412116..15413759

Molecular Weight (calculated)

59967.2 Da

IEP (calculated)

5.240

GRAVY (calculated)

-0.206

Length

547 amino acids

Sequence
(BLAST)

001: MKRDLHQFQG PPDTRFPNHG TANTGSSSKD KMMMVKEEED GGNMDELLAV LGYKVRSSEM AEVALKLEQL ETMMGNVQED GLSNLATDTV HYNPSELYSW
101: LDNMLTEFNP PPPEINNSFL AGAGGSDYDL KAIPGNAIYA RSDQFAIDSS SSSNQAGDNS QSTKRLKSCS SPDSLFTGTT VTTTTTESTR SVGLAAESTR
201: SMVLVDSQEN GVRLVHALMA CAEAIQNNDL SIAEALVKQI GFLAVSQAGA MRKVATYFAE ALARRIYRLS PPQTKIDHSL SDTLQMHFYE TCPYLKFAHF
301: TANQAILEAF EGKKRVHIID FSMNQGLQWP ALMQALALRE GGPPVFRLTG IGPPAADNSD HLHEVGCKLA QLAEAIHVEF EYRGFVANSL ADLDASMLEL
401: RPSEIEAVAV NSVFELHKLL GRTGGIEKVL GVVKQIKPVI FTVVEQESSH NGPVFLDRFT ESLHYYSTLF DSLEGVPSSQ DKVMSEVYLG KQICNLVACE
501: GPDRVERHET LSQWANRFGT SGFAPAHLGW LCLTAAKVIV WRRIMGA

Best Arabidopsis Sequence Match ( AT2G01570.1 )
(BLAST)

001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY

Arabidopsis Description

RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.