Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93592 | Sorghum | cytosol | 94.44 | 94.9 |
| Zm00001d013465_P001 | Maize | cytosol | 93.49 | 94.24 |
| Os03t0707600-01 | Rice | nucleus | 86.98 | 87.68 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 85.71 | 86.96 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 85.56 | 86.94 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 85.87 | 86.84 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 84.76 | 86.41 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 41.27 | 79.75 |
| GSMUA_Achr10P... | Banana | cytosol | 54.92 | 72.38 |
| GSMUA_Achr8P18250_001 | Banana | cytosol | 53.17 | 69.94 |
| KRH42544 | Soybean | cytosol, nucleus, plastid | 52.06 | 63.44 |
| KRH58636 | Soybean | nucleus | 52.22 | 62.91 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 50.95 | 62.21 |
| AT1G14920.1 | Thale cress | nucleus | 51.27 | 60.6 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 53.02 | 60.07 |
| Bra024875.1-P | Field mustard | nucleus | 52.54 | 57.77 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 52.38 | 57.69 |
| VIT_01s0011g05260.t01 | Wine grape | cytosol | 53.49 | 57.12 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 52.22 | 56.05 |
| CDY04092 | Canola | cytosol | 46.83 | 55.24 |
| CDY64837 | Canola | cytosol | 47.14 | 54.8 |
| Bra017443.1-P | Field mustard | cytosol | 47.14 | 54.3 |
| Zm00001d044065_P001 | Maize | cytosol | 32.86 | 43.58 |
| Zm00001d042127_P001 | Maize | plastid | 24.6 | 34.68 |
| Zm00001d011881_P001 | Maize | cytosol | 23.33 | 32.74 |
| Zm00001d009646_P001 | Maize | plastid | 24.44 | 32.42 |
| Zm00001d021826_P001 | Maize | cytosol | 21.75 | 30.31 |
| Zm00001d023248_P001 | Maize | cytosol | 22.7 | 28.26 |
| Zm00001d042472_P001 | Maize | cytosol | 24.13 | 28.25 |
| Zm00001d046783_P001 | Maize | mitochondrion | 20.0 | 27.63 |
| Zm00001d015815_P001 | Maize | cytosol | 18.1 | 27.4 |
| Zm00001d033834_P001 | Maize | cytosol, plastid | 23.49 | 26.86 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 23.49 | 26.01 |
| Zm00001d038518_P001 | Maize | cytosol | 20.48 | 25.96 |
| Zm00001d025133_P001 | Maize | cytosol | 19.52 | 24.9 |
| Zm00001d003657_P001 | Maize | cytosol, mitochondrion, nucleus | 19.52 | 24.7 |
| Zm00001d052380_P001 | Maize | plastid | 25.71 | 24.25 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 17.78 | 24.24 |
| Zm00001d049249_P001 | Maize | plastid | 29.68 | 24.13 |
| Zm00001d052463_P001 | Maize | cytosol | 20.0 | 24.09 |
| Zm00001d005029_P001 | Maize | plastid | 25.71 | 23.89 |
| Zm00001d045507_P001 | Maize | plastid | 23.33 | 23.86 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 17.94 | 23.2 |
| Zm00001d023247_P001 | Maize | plastid | 17.46 | 19.64 |
Protein Annotations
| Gene3D:1.10.10.1290 | MapMan:11.6.2.2 | MapMan:15.5.12 | MapMan:26.6.2.1 | ProteinID:AAK59901.1 | ProteinID:AAK59902.1 |
| ProteinID:AAK59903.1 | ProteinID:AAK59904.1 | ProteinID:AAK59905.1 | ProteinID:AAK59906.1 | ProteinID:AAK59907.1 | ProteinID:AAK59908.1 |
| ProteinID:AAK59909.1 | ProteinID:AAK59910.1 | ProteinID:AAK59911.1 | ProteinID:AAK59912.1 | ProteinID:AAK59913.1 | ProteinID:AAK59914.1 |
| ProteinID:AAK59915.1 | ProteinID:AAK59916.1 | ProteinID:AAK59917.1 | ProteinID:AAK59918.1 | ProteinID:AAK59919.1 | ProteinID:AAK59920.1 |
| ProteinID:AAK59921.1 | ProteinID:AAK59922.1 | ProteinID:AAK59923.1 | ProteinID:AAK59924.1 | ProteinID:AAK59925.1 | ProteinID:AAL10302.1 |
| ProteinID:AAL10303.1 | ProteinID:AAL10304.1 | ProteinID:AAL10305.1 | ProteinID:AAL10306.1 | ProteinID:AAL10307.1 | ProteinID:AAL10308.1 |
| ProteinID:AAL10309.1 | ProteinID:AAL10310.1 | ProteinID:AAL10311.1 | ProteinID:AAL10312.1 | ProteinID:AAL10313.1 | ProteinID:AAL10314.1 |
| ProteinID:AAL10315.1 | ProteinID:AAL10316.1 | ProteinID:AAL10317.1 | ProteinID:AAL10318.1 | ProteinID:AAL10319.1 | ProteinID:AAL10320.1 |
| ProteinID:AAL10321.1 | ProteinID:AAL10322.1 | ProteinID:AAL10323.1 | ProteinID:AAL10324.1 | ProteinID:AAL10325.1 | ProteinID:AAL10326.1 |
| ProteinID:AAL10327.1 | ProteinID:AAL10328.1 | ProteinID:AAL10329.1 | ProteinID:AAL10330.1 | ProteinID:AAL10331.1 | ProteinID:AAL10332.1 |
| ProteinID:AAL10333.1 | ProteinID:AAL10334.1 | ProteinID:AAL10335.1 | ProteinID:AAL10336.1 | ProteinID:AAL10337.1 | ProteinID:AAL10338.1 |
| ProteinID:AAL10339.1 | ProteinID:AAL10340.1 | ProteinID:AAL10341.1 | ProteinID:AAL10342.1 | ProteinID:AAL10343.1 | ProteinID:AAL10344.1 |
| ProteinID:AAL10345.1 | ProteinID:AAL10346.1 | ProteinID:AAL10347.1 | ProteinID:AAL10348.1 | ProteinID:AAL10349.1 | ProteinID:AAL10350.1 |
| ProteinID:AAL10351.1 | ProteinID:AAL10352.1 | ProteinID:AAL10353.1 | ProteinID:AAL10354.1 | ProteinID:AAL10355.1 | ProteinID:AAL10356.1 |
| ProteinID:AAL10357.1 | ProteinID:AAL10358.1 | ProteinID:AAL10359.1 | ProteinID:AAL10360.1 | ProteinID:AAL10361.1 | ProteinID:AAL10362.1 |
| ProteinID:AAL10363.1 | ProteinID:AAL10364.1 | ProteinID:AAL10365.1 | ProteinID:AAL10366.1 | ProteinID:AAL10367.1 | ProteinID:AAL10368.1 |
| ProteinID:AAL10369.1 | ProteinID:AAL10370.1 | ProteinID:AAL10371.1 | ProteinID:AAL10372.1 | ProteinID:AAL10373.1 | ProteinID:AAL10374.1 |
| ProteinID:AAL10375.1 | ProteinID:AAL10376.1 | ProteinID:AAL10377.1 | ProteinID:AAL10378.1 | ProteinID:AAL10379.1 | ProteinID:AAL10380.1 |
| ProteinID:AAL10381.1 | ProteinID:AAL10382.1 | ProteinID:AAL10383.1 | ProteinID:AAL10384.1 | ProteinID:AAL10385.1 | ProteinID:AAL10386.1 |
| ProteinID:AAL10387.1 | ProteinID:AAL10388.1 | ProteinID:AAL10389.1 | ProteinID:AAL10390.1 | ProteinID:AAL10391.1 | ProteinID:AAL10392.1 |
| ProteinID:AAL10393.1 | UniProt:B7ZY70 | EMBL:BT054262 | ProteinID:CAB51557.1 | InterPro:DELLA_N_sf | EMBL:DR799058 |
| GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003712 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009740 | GO:GO:0009987 |
| InterPro:IPR005202 | InterPro:IPR038088 | ProteinID:ONM08416.1 | PFAM:PF03514 | PFAM:PF12041 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 | UniProt:Q9ST48 | SMART:SM01129 | InterPro:TF_DELLA | InterPro:TF_DELLA_N |
| InterPro:TF_GRAS | UniParc:UPI00000319AC | EnsemblPlantsGene:Zm00001d033680 | EnsemblPlants:Zm00001d033680_P001 | EnsemblPlants:Zm00001d033680_T001 | SEG:seg |
Description
dwarf plant8 dwarf plant8
Coordinates
chr1:+:270918085..270919977
Molecular Weight (calculated)
66032.5 Da
IEP (calculated)
4.793
GRAVY (calculated)
-0.158
Length
630 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREYQDAGG SGGDMGSSKD KMMAAAAGAG EQEEEDVDEL LAALGYKVRS SDMADVAQKL EQLEMAMGMG GVGGAGATAD DGFVSHLATD TVHYNPSDLS
101: SWVESMLSEL NAPPAPLPPA TPAPRLASTS STVTSGAAAG AGYFDLPPAV DSSSSTYALK PIPSPVAAPS ADPSTDSARE PKRMRTGGGS TSSSSSSSSS
201: MDGGRTRSSV VEAAPPATQA SAAANGPAVP VVVVDTQEAG IRLVHALLAC AEAVQQENFS AAEALVKQIP MLASSQGGAM RKVAAYFGEA LARRVYRFRP
301: PPDSSLLDAA FADLLHAHFY ESCPYLKFAH FTANQAILEA FAGCRRVHVV DFGIKQGMQW PALLQALALR PGGPPSFRLT GVGPPQPDET DALQQVGWKL
401: AQFAHTIRVD FQYRGLVAAT LADLEPFMLQ PEGDDTDDEP EVIAVNSVFE LHRLLAQPGA LEKVLGTVRA VRPRIVTVVE QEANHNSGTF LDRFTESLHY
501: YSTMFDSLEG AGAGSGQSTD ASPAAAGGTD QVMSEVYLGR QICNVVACEG AERTERHETL GQWRSRLGGS GFAPVHLGSN AYKQASTLLA LFAGGDGYRV
601: EEKDGCLTLG WHTRPLIATS AWRVAAAAAP
101: SWVESMLSEL NAPPAPLPPA TPAPRLASTS STVTSGAAAG AGYFDLPPAV DSSSSTYALK PIPSPVAAPS ADPSTDSARE PKRMRTGGGS TSSSSSSSSS
201: MDGGRTRSSV VEAAPPATQA SAAANGPAVP VVVVDTQEAG IRLVHALLAC AEAVQQENFS AAEALVKQIP MLASSQGGAM RKVAAYFGEA LARRVYRFRP
301: PPDSSLLDAA FADLLHAHFY ESCPYLKFAH FTANQAILEA FAGCRRVHVV DFGIKQGMQW PALLQALALR PGGPPSFRLT GVGPPQPDET DALQQVGWKL
401: AQFAHTIRVD FQYRGLVAAT LADLEPFMLQ PEGDDTDDEP EVIAVNSVFE LHRLLAQPGA LEKVLGTVRA VRPRIVTVVE QEANHNSGTF LDRFTESLHY
501: YSTMFDSLEG AGAGSGQSTD ASPAAAGGTD QVMSEVYLGR QICNVVACEG AERTERHETL GQWRSRLGGS GFAPVHLGSN AYKQASTLLA LFAGGDGYRV
601: EEKDGCLTLG WHTRPLIATS AWRVAAAAAP
001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
Arabidopsis Description
RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.