Factsheet for Zm00001d012465_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042998_P001	Maize	plastid	65.45	83.47
GSMUA_Achr3P14230_001	Banana	cytosol	62.13	73.33
KRH13114	Soybean	cytosol, plastid	17.61	63.1
VIT_10s0116g01910.t01	Wine grape	cytosol, mitochondrion	17.28	60.47
CDX91226	Canola	cytosol	43.19	56.28
TraesCS3D01G343800.1	Wheat	plastid	74.75	43.86
EES03828	Sorghum	plastid	77.74	43.17
TraesCS3B01G382400.1	Wheat	plastid	75.42	41.88
TraesCS3A01G349800.1	Wheat	plastid	75.08	41.54
Os01t0830000-01	Rice	plasma membrane, plastid	74.09	40.99
CDX97313	Canola	vacuole	14.95	40.18
GSMUA_Achr1P17690_001	Banana	mitochondrion	42.19	37.91
KRH03586	Soybean	plastid	63.46	36.04
Bra029516.1-P	Field mustard	plastid	64.78	35.33
KRH20223	Soybean	plastid	63.79	35.29
Solyc03g031700.2.1	Tomato	plastid	63.79	35.04
PGSC0003DMT400013035	Potato	plastid	63.46	34.85
PGSC0003DMT400042503	Potato	plastid	63.12	34.8
Solyc02g080440.2.1	Tomato	plastid	63.12	34.8
AT4G04770.1	Thale cress	plastid	63.79	34.47
HORVU3Hr1G087860.1	Barley	plastid	73.09	33.69
VIT_10s0116g01920.t01	Wine grape	plastid	47.51	28.09
CDY16648	Canola	plastid	44.52	27.97
CDX94573	Canola	plastid	44.19	27.94
AT5G44316.1	Thale cress	plastid	42.86	27.45
Zm00001d008549_P002	Maize	plastid	20.93	13.1

Protein Annotations

EnsemblPlants:Zm00001d012465_P001	EnsemblPlants:Zm00001d012465_T001	EnsemblPlantsGene:Zm00001d012465	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf	PANTHER:PTHR30508
PANTHER:PTHR30508:SF1	PFAM:PF01458	ProteinID:AQK99602.1	SEG:seg	SUPFAM:SSF101960	UniParc:UPI0008433FE9
UniProt:A0A1D6G8Y7	MapMan:35.1	:	:	:	:

Description

UPF0051 protein ABCI8 chloroplastic

Coordinates

chr8:+:174975143..174978806

Molecular Weight (calculated)

32559.2 Da

IEP (calculated)

8.621

GRAVY (calculated)

-0.459

Length

301 amino acids

Sequence
(BLAST)

001: MASSSSLFSP CALTAKLGIG HASYGSGRRA NLRRRGRLSV VAVQTGPQKP SPSSSQAAAA EDEADALQKL LKREYKYGFE GAEIKYSTVQ NWYSGDEEGK
101: GGIYNFVTKR GRCKGHGSKI SWTQVETGSA ITWKYPSVEL IGDDSVGEFY SVALTKDCQQ ADTGTKMIHK GKNSRSRIIS KGISAGKSRN CYRGLVLMNP
201: SAENAYNSSQ CDSLLIGDNA AANTYPTIQV GCTSGRVEHE ASTSKIGEDQ LFYFQQRGVD HEKAVAAMIG GFCRSVFEHL PYEFAQEVDA LMNLKLEGSV
301: G

Best Arabidopsis Sequence Match ( AT4G04770.1 )
(BLAST)

001: MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI
101: DSFTIPKGLS EETIRLISKL KEEPDWMLEF RFKAYAKFLK LEEPKWSDNR YPSINFQDMC YYSAPKKKPT LNSLDEVDPQ LLEYFDKLGV PLTEQKRLAN
201: VAVDAVIDSV SIATTHRKTL EKSGVIFCSI SEAIREYPDL IKKYLGRVVP SDDNYYAALN SAVFSDGSFC YIPKNTRCPM PISTYFRINA METGQFERTL
301: IVAEEGSFVE YLEGCTAPSY DTNQLHAAVV ELYCGKGAEI KYSTVQNWYA GDEQGKGGIY NFVTKRGLCA GDRSKISWTQ VETGSAITWK YPSVVLEGDD
401: SVGEFYSVAL TNNYQQADTG TKMIHKGKNT KSRIISKGIS AGHSRNCYRG LVQVQSKAEG AKNTSTCDSM LIGDKAAANT YPYIQVKNPS AKVEHEASTS
501: KIGEDQLFYF QQRGIDHERA LAAMISGFCR DVFNKLPDEF GAEVNQLMSI KLEGSVG

Arabidopsis Description

ABCI8UPF0051 protein ABCI8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZS97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.