CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97587
KRH31287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04770.1	KRG97587	AT5G10210.1	21798944
AT4G04770.1	KRH31287	AT5G10210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20223	Soybean	plastid	93.02	90.62
GSMUA_Achr3P14230_001	Banana	cytosol	40.19	83.53
KRH13114	Soybean	cytosol, plastid	13.21	83.33
GSMUA_Achr1P17690_001	Banana	mitochondrion	49.62	78.51
PGSC0003DMT400042503	Potato	plastid	76.98	74.73
Bra029516.1-P	Field mustard	plastid	77.74	74.64
Solyc03g031700.2.1	Tomato	plastid	77.17	74.64
Solyc02g080440.2.1	Tomato	plastid	76.79	74.54
PGSC0003DMT400013035	Potato	plastid	76.98	74.45
AT4G04770.1	Thale cress	plastid	77.36	73.61
TraesCS3D01G343800.1	Wheat	plastid	69.06	71.34
VIT_10s0116g01920.t01	Wine grape	plastid	67.55	70.33
Os01t0830000-01	Rice	plasma membrane, plastid	69.62	67.83
TraesCS3A01G349800.1	Wheat	plastid	68.87	67.1
TraesCS3B01G382400.1	Wheat	plastid	68.49	66.97
EES03828	Sorghum	plastid	68.3	66.79
AT5G44316.1	Thale cress	plastid	58.87	66.38
Zm00001d012465_P001	Maize	plastid	36.04	63.46
Zm00001d042998_P001	Maize	plastid	25.09	56.36
HORVU3Hr1G087860.1	Barley	plastid	68.87	55.9
KRH28278	Soybean	plastid	14.72	17.11
KRH77216	Soybean	plasma membrane	9.62	17.0
KRH63379	Soybean	cytosol	6.23	15.71

Protein Annotations

EMBL:ACUP02010354	EnsemblPlants:KRH03586	EnsemblPlantsGene:GLYMA_17G107200	EntrezGene:100787857	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	InterPro:SUF_FeS_clus_asmbl_SufB	InterPro:SUF_FeS_clus_asmbl_SufBD
InterPro:SUF_FeS_clus_asmbl_SufBD_sf	PANTHER:PTHR30508	PANTHER:PTHR30508:SF1	PFAM:PF01458	ProteinID:KRH03586	ProteinID:KRH03586.1
SUPFAM:SSF101960	TIGRFAMs:TIGR01980	UniParc:UPI00003E110E	UniProt:I1MU14	MapMan:7.11.1.1.1.1	:

Description

hypothetical protein

Coordinates

chr17:+:8416908..8419317

Molecular Weight (calculated)

58795.6 Da

IEP (calculated)

5.818

GRAVY (calculated)

-0.360

Length

530 amino acids

Sequence
(BLAST)

001: MASLLRFNGV SLFPLPSQPT RDPILPKPSR LVTVRAEVKE TSAPAAATSS DEKIREILRN RDYDKKFGFS VEIESLTIPK GLSKETIGLI SSLKEEPHWM
101: LEFRLKALDK FLSMKEPTWS DNTYPPIDLQ NICYYSAPKN KPSLQSLDDA DPELLRYFEK LGVPLNEQKR LANVAVDAVL DSVSIATTHR KTLEKAGVIF
201: CSISEAIKEY PDLVKKYLGK VVPSDDNYYA ALNAAVFSDG SFCYIPKDTK CPMQISTYFR INALETGQFE RTLIVADDRS SVEYLEGCTA PSYDRNQLHA
301: AVVELYCGEG AEIKYSTVQN WYAGDEEGKG GVYNFVTKRG LCGGAGSKIS WTQVETGSAI TWKYPSVVLE GDGSVGEFYS VALTNNYQQA DTGTKMIHKG
401: KNTRSRIISK GISVGHSRNC YRGLVQVLSK ADNARNSSQC DSMLIGDNAA ANTYPYIQVK NPTARIEHEA STSKIGEDQL FYFQQRGIDY EKAMAAMISG
501: FCRDVFNELP DEFGSEVNQL MSLKLEGSVG

Best Arabidopsis Sequence Match ( AT4G04770.1 )
(BLAST)

001: MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI
101: DSFTIPKGLS EETIRLISKL KEEPDWMLEF RFKAYAKFLK LEEPKWSDNR YPSINFQDMC YYSAPKKKPT LNSLDEVDPQ LLEYFDKLGV PLTEQKRLAN
201: VAVDAVIDSV SIATTHRKTL EKSGVIFCSI SEAIREYPDL IKKYLGRVVP SDDNYYAALN SAVFSDGSFC YIPKNTRCPM PISTYFRINA METGQFERTL
301: IVAEEGSFVE YLEGCTAPSY DTNQLHAAVV ELYCGKGAEI KYSTVQNWYA GDEQGKGGIY NFVTKRGLCA GDRSKISWTQ VETGSAITWK YPSVVLEGDD
401: SVGEFYSVAL TNNYQQADTG TKMIHKGKNT KSRIISKGIS AGHSRNCYRG LVQVQSKAEG AKNTSTCDSM LIGDKAAANT YPYIQVKNPS AKVEHEASTS
501: KIGEDQLFYF QQRGIDHERA LAAMISGFCR DVFNKLPDEF GAEVNQLMSI KLEGSVG

Arabidopsis Description

ABCI8UPF0051 protein ABCI8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZS97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.