CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97587
KRH31287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04770.1	KRG97587	AT5G10210.1	21798944
AT4G04770.1	KRH31287	AT5G10210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03586	Soybean	plastid	90.62	93.02
GSMUA_Achr3P14230_001	Banana	cytosol	39.34	83.92
KRH13114	Soybean	cytosol, plastid	12.87	83.33
GSMUA_Achr1P17690_001	Banana	mitochondrion	48.71	79.1
Solyc02g080440.2.1	Tomato	plastid	77.76	77.47
PGSC0003DMT400042503	Potato	plastid	77.57	77.29
Bra029516.1-P	Field mustard	plastid	77.76	76.63
Solyc03g031700.2.1	Tomato	plastid	76.29	75.73
AT4G04770.1	Thale cress	plastid	77.39	75.58
PGSC0003DMT400013035	Potato	plastid	75.74	75.18
VIT_10s0116g01920.t01	Wine grape	plastid	67.83	72.5
TraesCS3D01G343800.1	Wheat	plastid	67.1	71.15
EES03828	Sorghum	plastid	68.01	68.27
Os01t0830000-01	Rice	plasma membrane, plastid	68.01	68.01
TraesCS3A01G349800.1	Wheat	plastid	67.83	67.83
TraesCS3B01G382400.1	Wheat	plastid	67.46	67.71
AT5G44316.1	Thale cress	plastid	58.46	67.66
Zm00001d012465_P001	Maize	plastid	35.29	63.79
Zm00001d042998_P001	Maize	plastid	24.82	57.2
HORVU3Hr1G087860.1	Barley	plastid	67.65	56.36
KRH28278	Soybean	plastid	15.07	17.98
KRH77216	Soybean	plasma membrane	9.38	17.0
KRH63379	Soybean	cytosol	6.07	15.71

Protein Annotations

EntrezGene:100779950	MapMan:7.11.1.1.1.1	EMBL:ACUP02008248	EnsemblPlantsGene:GLYMA_13G163700	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	UniProt:I1LZV0	EnsemblPlants:KRH20223
ProteinID:KRH20223	ProteinID:KRH20223.1	PFAM:PF01458	PANTHER:PTHR30508	PANTHER:PTHR30508:SF1	SUPFAM:SSF101960
InterPro:SUF_FeS_clus_asmbl_SufB	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf	TIGRFAMs:TIGR01980	UniParc:UPI000233B3A1	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:27895777..27898359

Molecular Weight (calculated)

60599.7 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.395

Length

544 amino acids

Sequence
(BLAST)

001: MASLLRCNGV FLSPLPPQPR RDPILPKFFL PQSPNPKPSR LLTVRAEVKE TSSAAATTTT TTSSDDKIRE ILRNRDYDKK FGFSVDIESL TIPKGLSKET
101: IRLISSLKEE PQWMLEFRLK AFEKFLSMKE PTWSDNTYPP IDFQNICYYS APKNKPSLQS LDDADPELLR YFDKLGVPLN EQKRLANVAV DAVLDSVSIA
201: TTHRKTLEKA GVIFCSISEA IKEYPDLVRK HLGRVVPSDD NYYAALNAAV FSDGSFCYIP KDTKCPMQIS TYFRINALET GQFERTLIVA DDRSSVEYLE
301: GCTAPSYDRN QLHAAVVELY CGEGAEIKYS TVQNWYAGDE EGKGGVYNFV TKRGLCAGAG SKISWTQVET GSAITWKYPS VVLEGDGSVG EFYSVALTNN
401: YQQADTGTKM IHKGKNTRSR IISKGISVGH SRNCYRGLVQ VLSKAENARN SSQCDSMLIG DNAAANTYPY IQVKNPTARI EHEASTSKIG EDQLFYFQQR
501: GIDYEKAMAA MISGFCRDVF NELPDEFGSE VNQLMSLKLE GSVG

Best Arabidopsis Sequence Match ( AT4G04770.1 )
(BLAST)

001: MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI
101: DSFTIPKGLS EETIRLISKL KEEPDWMLEF RFKAYAKFLK LEEPKWSDNR YPSINFQDMC YYSAPKKKPT LNSLDEVDPQ LLEYFDKLGV PLTEQKRLAN
201: VAVDAVIDSV SIATTHRKTL EKSGVIFCSI SEAIREYPDL IKKYLGRVVP SDDNYYAALN SAVFSDGSFC YIPKNTRCPM PISTYFRINA METGQFERTL
301: IVAEEGSFVE YLEGCTAPSY DTNQLHAAVV ELYCGKGAEI KYSTVQNWYA GDEQGKGGIY NFVTKRGLCA GDRSKISWTQ VETGSAITWK YPSVVLEGDD
401: SVGEFYSVAL TNNYQQADTG TKMIHKGKNT KSRIISKGIS AGHSRNCYRG LVQVQSKAEG AKNTSTCDSM LIGDKAAANT YPYIQVKNPS AKVEHEASTS
501: KIGEDQLFYF QQRGIDHERA LAAMISGFCR DVFNKLPDEF GAEVNQLMSI KLEGSVG

Arabidopsis Description

ABCI8UPF0051 protein ABCI8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZS97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.