Factsheet for Solyc03g031700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g078620.1.1
Solyc04g055130.1.1
Solyc04g055140.1.1
Solyc04g055150.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04770.1	Solyc03g078620.1.1	AT5G10210.1	21798944
AT4G04770.1	Solyc04g055130.1.1	AT5G10210.1	21798944
AT4G04770.1	Solyc04g055140.1.1	AT5G10210.1	21798944
AT4G04770.1	Solyc04g055150.1.1	AT5G10210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013035	Potato	plastid	98.18	98.18
Solyc02g080440.2.1	Tomato	plastid	87.59	87.91
VIT_10s0116g01910.t01	Wine grape	cytosol, mitochondrion	12.96	82.56
GSMUA_Achr3P14230_001	Banana	cytosol	38.14	81.96
KRH13114	Soybean	cytosol, plastid	12.23	79.76
CDX91226	Canola	cytosol	33.39	79.22
KRH03586	Soybean	plastid	74.64	77.17
AT4G04770.1	Thale cress	plastid	77.92	76.66
Bra029516.1-P	Field mustard	plastid	77.19	76.63
KRH20223	Soybean	plastid	75.73	76.29
GSMUA_Achr1P17690_001	Banana	mitochondrion	46.53	76.12
VIT_10s0116g01920.t01	Wine grape	plastid	68.43	73.67
TraesCS3D01G343800.1	Wheat	plastid	65.33	69.79
EES03828	Sorghum	plastid	67.52	68.27
Os01t0830000-01	Rice	plasma membrane, plastid	67.34	67.83
TraesCS3A01G349800.1	Wheat	plastid	66.97	67.46
TraesCS3B01G382400.1	Wheat	plastid	66.61	67.34
AT5G44316.1	Thale cress	plastid	57.3	66.81
Zm00001d012465_P001	Maize	plastid	35.04	63.79
Zm00001d042998_P001	Maize	plastid	24.64	57.2
HORVU3Hr1G087860.1	Barley	plastid	66.79	56.05
CDX97313	Canola	vacuole	9.12	44.64
Solyc08g007010.2.1	Tomato	plastid	15.51	17.53

Protein Annotations

EnsemblPlants:Solyc03g031700.2.1	EnsemblPlantsGene:Solyc03g031700.2	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016226	InterPro:SUF_FeS_clus_asmbl_SufB	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf	PANTHER:PTHR30508
PANTHER:PTHR30508:SF1	PFAM:PF01458	SUPFAM:SSF101960	TIGRFAMs:TIGR01980	UniParc:UPI000276928F	UniProt:K4BFE2
MapMan:7.11.1.1.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:4165084..4168425

Molecular Weight (calculated)

61285.3 Da

IEP (calculated)

6.295

GRAVY (calculated)

-0.452

Length

548 amino acids

Sequence
(BLAST)

001: MASLVTNGIS CFSPQPITEQ PKLSKGSQFL LKLANPRNPN SRILKVKAAE LSYEATIDSP GKESSVSTSN ENDPLQKFLK RDYKWGFNQE IDSFSLPKGL
101: SAETVKLISG RKNEPNWMLE FRLKSYEKFL KMKEPKWSDN RYPEISFQDI CYYSEPKKKP TLNSLDEADP ELIKYFDKLG VPLNERNRLA NVAVDAVLDS
201: VSIATTHRKT LEKAGVIFCS ISEAIREYPD LVKKYLGRVV PPEDNFYAAL NSAVFSDGSF VYIPKNTRCP MQISTYFRIN AMETGQFERT VIIAEEGSFV
301: EYLEGCTAPS YDTNQLHAAV VELYCHEGAE IKYSTVQNWY AGDEEGRGGI YNFVTKRGIC AGARSKISWT QVETGSAITW KYPSVVLEGD ESVGEFYSVA
401: LTNNYQQADT GTKMIHKGKN TRSRIISKGI SAGHSRNCYR GLVQVLSSAD NAKNSSQCDS MLIGDTAAAN TYPYIQSKNP TARIEHEATT SKIGEDQLFY
501: FQQRGIDYEK AMAAMISGFC RDVFNELPDE FGAEVNQLMS LKLEGSVG

Best Arabidopsis Sequence Match ( AT4G04770.1 )
(BLAST)

001: MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI
101: DSFTIPKGLS EETIRLISKL KEEPDWMLEF RFKAYAKFLK LEEPKWSDNR YPSINFQDMC YYSAPKKKPT LNSLDEVDPQ LLEYFDKLGV PLTEQKRLAN
201: VAVDAVIDSV SIATTHRKTL EKSGVIFCSI SEAIREYPDL IKKYLGRVVP SDDNYYAALN SAVFSDGSFC YIPKNTRCPM PISTYFRINA METGQFERTL
301: IVAEEGSFVE YLEGCTAPSY DTNQLHAAVV ELYCGKGAEI KYSTVQNWYA GDEQGKGGIY NFVTKRGLCA GDRSKISWTQ VETGSAITWK YPSVVLEGDD
401: SVGEFYSVAL TNNYQQADTG TKMIHKGKNT KSRIISKGIS AGHSRNCYRG LVQVQSKAEG AKNTSTCDSM LIGDKAAANT YPYIQVKNPS AKVEHEASTS
501: KIGEDQLFYF QQRGIDHERA LAAMISGFCR DVFNKLPDEF GAEVNQLMSI KLEGSVG

Arabidopsis Description

ABCI8UPF0051 protein ABCI8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZS97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.