CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P14230_001	Banana	cytosol	64.5	58.43
CDX97313	Canola	vacuole	25.54	52.68
VIT_10s0116g01910.t01	Wine grape	cytosol, mitochondrion	19.05	51.16
KRH13114	Soybean	cytosol, plastid	18.18	50.0
Zm00001d012465_P001	Maize	plastid	56.28	43.19
Zm00001d042998_P001	Maize	plastid	38.1	37.29
PGSC0003DMT400042503	Potato	plastid	79.65	33.7
Solyc02g080440.2.1	Tomato	plastid	79.22	33.52
PGSC0003DMT400013035	Potato	plastid	79.22	33.39
Solyc03g031700.2.1	Tomato	plastid	79.22	33.39
TraesCS3D01G343800.1	Wheat	plastid	73.59	33.14
TraesCS3B01G382400.1	Wheat	plastid	73.59	31.37
TraesCS3A01G349800.1	Wheat	plastid	73.59	31.25
EES03828	Sorghum	plastid	72.73	31.0
Os01t0830000-01	Rice	plasma membrane, plastid	72.73	30.88
CDY16648	Canola	plastid	58.44	28.18
CDX94573	Canola	plastid	58.01	28.15
GSMUA_Achr1P17690_001	Banana	mitochondrion	39.39	27.16
HORVU3Hr1G087860.1	Barley	plastid	73.59	26.03
CDY26899	Canola	plastid	22.94	11.21
CDY32277	Canola	plastid	22.94	11.04

Protein Annotations

EnsemblPlants:CDX91226	EnsemblPlantsGene:GSBRNA2T00152386001	GO:A0A078DPT6	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf	PANTHER:PTHR30508
PANTHER:PTHR30508:SF1	PFAM:PF01458	ProteinID:CDX91226	ProteinID:CDX91226.1	SUPFAM:SSF101960	UniParc:UPI0004EEBFBA
MapMan:35.1	:	:	:	:	:

Description

BnaC02g26370D

Coordinates

chrLK031866:-:53140..54024

Molecular Weight (calculated)

25864.9 Da

IEP (calculated)

6.922

GRAVY (calculated)

-0.346

Length

231 amino acids

Sequence
(BLAST)

001: MPIPTYFMIN AMETGQFERT LDVAEERSFV EYGEGCTAPY DTNQLHAAVV ELYCREGAKI KYSTVQKAYV GDEQGKGGIY NFLTEVTQVE TGSAITMKYP
101: SMVLESDDSV GEFYSVALTN NYQQADTGTT MIHKGKNTKS RIISKGISAG HSRNCYRGLV QVKNPSARVM RVSQKIGKDQ LFYFQQRGID HERVLAAMIF
201: RFCREIFNKL PDEFGAEVNQ LIGIKLEGSV G

Best Arabidopsis Sequence Match ( AT4G04770.1 )
(BLAST)

001: MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI
101: DSFTIPKGLS EETIRLISKL KEEPDWMLEF RFKAYAKFLK LEEPKWSDNR YPSINFQDMC YYSAPKKKPT LNSLDEVDPQ LLEYFDKLGV PLTEQKRLAN
201: VAVDAVIDSV SIATTHRKTL EKSGVIFCSI SEAIREYPDL IKKYLGRVVP SDDNYYAALN SAVFSDGSFC YIPKNTRCPM PISTYFRINA METGQFERTL
301: IVAEEGSFVE YLEGCTAPSY DTNQLHAAVV ELYCGKGAEI KYSTVQNWYA GDEQGKGGIY NFVTKRGLCA GDRSKISWTQ VETGSAITWK YPSVVLEGDD
401: SVGEFYSVAL TNNYQQADTG TKMIHKGKNT KSRIISKGIS AGHSRNCYRG LVQVQSKAEG AKNTSTCDSM LIGDKAAANT YPYIQVKNPS AKVEHEASTS
501: KIGEDQLFYF QQRGIDHERA LAAMISGFCR DVFNKLPDEF GAEVNQLMSI KLEGSVG

Arabidopsis Description

ABCI8UPF0051 protein ABCI8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZS97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.