Factsheet for VIT_10s0116g01910.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13114	Soybean	cytosol, plastid	77.91	79.76
CDX97313	Canola	vacuole	50.0	38.39
GSMUA_Achr3P14230_001	Banana	cytosol	72.09	24.31
Zm00001d042998_P001	Maize	plastid	61.63	22.46
VIT_02s0012g01060.t01	Wine grape	cytosol	30.23	20.31
CDX91226	Canola	cytosol	51.16	19.05
GSMUA_Achr1P17690_001	Banana	mitochondrion	70.93	18.21
Zm00001d012465_P001	Maize	plastid	60.47	17.28
AT5G44316.1	Thale cress	plastid	74.42	13.62
Solyc03g031700.2.1	Tomato	plastid	82.56	12.96
Solyc02g080440.2.1	Tomato	plastid	81.4	12.82
PGSC0003DMT400013035	Potato	plastid	81.4	12.77
PGSC0003DMT400042503	Potato	plastid	80.23	12.64
Bra029516.1-P	Field mustard	plastid	75.58	11.78
AT4G04770.1	Thale cress	plastid	75.58	11.67
TraesCS3D01G343800.1	Wheat	plastid	62.79	10.53
VIT_03s0017g01730.t01	Wine grape	mitochondrion	32.56	10.04
TraesCS3B01G382400.1	Wheat	plastid	62.79	9.96
TraesCS3A01G349800.1	Wheat	plastid	62.79	9.93
EES03828	Sorghum	plastid	61.63	9.78
Os01t0830000-01	Rice	plasma membrane, plastid	61.63	9.74
HORVU3Hr1G087860.1	Barley	plastid	62.79	8.27
VIT_10s0116g01920.t01	Wine grape	plastid	5.81	0.98
VIT_02s0012g01050.t01	Wine grape	plastid	2.33	0.53

Protein Annotations

ArrayExpress:VIT_10s0116g01910	EMBL:FN595248	EnsemblPlants:VIT_10s0116g01910.t01	EnsemblPlantsGene:VIT_10s0116g01910	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf
PANTHER:PTHR30508	PFAM:PF01458	ProteinID:CCB48229	ProteinID:CCB48229.1	SUPFAM:SSF101960	UniParc:UPI000210901B
UniProt:F6H7N7	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr10:-:1165904..1167514

Molecular Weight (calculated)

9765.7 Da

IEP (calculated)

4.791

GRAVY (calculated)

-0.306

Length

86 amino acids

Sequence
(BLAST)

1: MPHYRRVEIF AYLGVKNPTA RIEHEASTSK IGEDQLFYFQ QRGIDYEKAM AAMISGFCKD VFNELPDEFG AEVNQLMSLK LEGSVG

Best Arabidopsis Sequence Match ( AT4G04770.1 )
(BLAST)

001: MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI
101: DSFTIPKGLS EETIRLISKL KEEPDWMLEF RFKAYAKFLK LEEPKWSDNR YPSINFQDMC YYSAPKKKPT LNSLDEVDPQ LLEYFDKLGV PLTEQKRLAN
201: VAVDAVIDSV SIATTHRKTL EKSGVIFCSI SEAIREYPDL IKKYLGRVVP SDDNYYAALN SAVFSDGSFC YIPKNTRCPM PISTYFRINA METGQFERTL
301: IVAEEGSFVE YLEGCTAPSY DTNQLHAAVV ELYCGKGAEI KYSTVQNWYA GDEQGKGGIY NFVTKRGLCA GDRSKISWTQ VETGSAITWK YPSVVLEGDD
401: SVGEFYSVAL TNNYQQADTG TKMIHKGKNT KSRIISKGIS AGHSRNCYRG LVQVQSKAEG AKNTSTCDSM LIGDKAAANT YPYIQVKNPS AKVEHEASTS
501: KIGEDQLFYF QQRGIDHERA LAAMISGFCR DVFNKLPDEF GAEVNQLMSI KLEGSVG

Arabidopsis Description

ABCI8UPF0051 protein ABCI8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZS97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.