Factsheet for VIT_02s0012g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0084g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32500.1	VIT_13s0084g00110.t01	AT3G10670.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007010.2.1	Tomato	plastid	61.33	47.42
PGSC0003DMT400052824	Potato	plastid	61.6	47.34
AT1G32500.1	Thale cress	mitochondrion, plastid	55.47	43.79
Bra010169.1-P	Field mustard	plastid	55.47	43.61
CDY32277	Canola	plastid	55.73	43.54
CDY26899	Canola	plastid	54.67	43.34
GSMUA_Achr10P...	Banana	plastid	54.13	41.43
VIT_03s0017g01730.t01	Wine grape	mitochondrion	30.13	40.5
TraesCS3A01G047200.1	Wheat	plastid	41.6	32.91
TraesCS3D01G032700.1	Wheat	plastid	41.6	32.91
EES02550	Sorghum	plastid	41.87	32.78
TraesCS3B01G035600.1	Wheat	plastid	41.6	32.77
Zm00001d008549_P002	Maize	plastid	41.87	32.64
Os01t0127300-01	Rice	plasma membrane	39.73	30.91
HORVU3Hr1G004330.1	Barley	plastid	40.8	30.18
VIT_10s0116g01920.t01	Wine grape	plastid	14.13	10.41
VIT_02s0012g01060.t01	Wine grape	cytosol	0.8	2.34
VIT_10s0116g01910.t01	Wine grape	cytosol, mitochondrion	0.53	2.33

Protein Annotations

EntrezGene:100260803	wikigene:100260803	EntrezGene:100263782	wikigene:100263782	MapMan:7.11.1.1.1.3	EMBL:AM437054
ProteinID:CAN69419	ProteinID:CAN69419.1	ProteinID:CCB57917	ProteinID:CCB57917.1	UniProt:F6HTA7	EMBL:FN596247
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226
EntrezGene:LOC100260803	wikigene:LOC100260803	EntrezGene:LOC100263782	wikigene:LOC100263782	PFAM:PF01458	PANTHER:PTHR43575
PANTHER:PTHR43575:SF2	SUPFAM:SSF101960	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf	InterPro:SUF_FeS_clus_asmbl_SufD	UniParc:UPI0002108061
ArrayExpress:VIT_02s0012g01050	EnsemblPlantsGene:VIT_02s0012g01050	EnsemblPlants:VIT_02s0012g01050.t01	unigene:Vvi.2146	RefSeq:XP_002278544	RefSeq:XP_002278544.1
RefSeq:XP_003631753	RefSeq:XP_003631753.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:7019586..7021585

Molecular Weight (calculated)

40689.2 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.138

Length

375 amino acids

Sequence
(BLAST)

001: MAATLLSPHL LLNPKLSIQN SASKFPTPKS RSTPKIRAAF SDPFVLQIAE SLEDSLSSSS TSSPPPLQKL RDASSQTVLS TPWPSRKDEP FRFTDTSLIR
101: YSQVTPISHP PTSIAISTDT QFPNLSIVDG HIVYSLSNLS QLPTGVFVGS LSSLPSETIT KKVSEFVANF EGDLFWSLNG LGTPDMAVVY VPAGCRVEMP
201: LHIVYYSVEG GDIGSKKLPV SNPRVFVLVE EGGEIGVIEE YVGVGENKCY WANTVTEVVI GEGAKVKHSY IQSQSLSAAH IKWTSVQQGS SSSYELIEVS
301: TGGKLSRHNV NIQQVGPDTV TELSAFHLSV GDQTQDLHSR LVLDHPRGYS RQLHKCIVAH SLGQAVFDGN IKVNR

Best Arabidopsis Sequence Match ( AT1G32500.1 )
(BLAST)

001: MAAATVLGRL SLIPNLSSKP KLKSNRRTTS TSVSVRAQAS FSDPFVLQLA ESLEDSLSAS PSSSLPLQRI RDSSAETLLS TPWPSRKDEP FRFTDTSLIR
101: SSQIEPISTQ QRNSEILDNL TETQFTNAVI IDGFVSNLTI GPSDLPDGVY FGKYSGLPDE LTNRISEFIG NFDSGDLFWS INGMGAPDLM VIYVPEGCKV
201: ENPIYLRYFS GETGDRESKR LPVSNPRVFV LVEEGGEIGI VEEFVGKDEE GFYWTNPVLE VVVQKNAKLK HSYLQKESMA SAHIKWTFVR QEAESEYELV
301: EVSTGGKLGR HNVHVQQLGP DTLTELTTFH MCVNEQTLDL HSKIILDHPR GASRQLHKCI VAHSSGQAVF DGNVRVNRFA QQTNAGQLTR SLLLKPRATV
401: NIKPNLQIIA DDVKCSHGAA ISDLEEDQLF YFQARGIDLE TARRALISSF GSEVIEKFPN REIRDQARNH VKGLL

Arabidopsis Description

ABCI7At1g32500 [Source:UniProtKB/TrEMBL;Acc:Q058Q9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.