Factsheet for Solyc08g007010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g048540.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32500.1	Solyc06g048540.2.1	AT3G10670.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052824	Potato	plastid	98.76	98.16
VIT_02s0012g01060.t01	Wine grape	cytosol	17.94	67.97
VIT_03s0017g01730.t01	Wine grape	mitochondrion	36.08	62.72
VIT_02s0012g01050.t01	Wine grape	plastid	47.42	61.33
KRH28278	Soybean	plastid	54.23	57.68
AT1G32500.1	Thale cress	mitochondrion, plastid	56.29	57.47
KRH77216	Soybean	plasma membrane	35.46	57.33
CDY26899	Canola	plastid	55.26	56.66
Bra010169.1-P	Field mustard	plastid	55.46	56.39
CDY32277	Canola	plastid	55.26	55.83
GSMUA_Achr10P...	Banana	plastid	54.64	54.08
TraesCS3B01G035600.1	Wheat	plastid	46.6	47.48
TraesCS3D01G032700.1	Wheat	plastid	46.39	47.47
TraesCS3A01G047200.1	Wheat	plastid	46.19	47.26
Zm00001d008549_P002	Maize	plastid	44.54	44.91
KRH63379	Soybean	cytosol	19.38	44.76
EES02550	Sorghum	plastid	43.92	44.47
HORVU3Hr1G004330.1	Barley	plastid	46.39	44.38
Os01t0127300-01	Rice	plasma membrane	43.51	43.78
Solyc02g080440.2.1	Tomato	plastid	17.53	15.57
Solyc03g031700.2.1	Tomato	plastid	17.53	15.51

Protein Annotations

MapMan:7.11.1.1.1.3	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010027
GO:GO:0016043	GO:GO:0016226	UniProt:K4CII8	PFAM:PF01458	PANTHER:PTHR43575	PANTHER:PTHR43575:SF2
SUPFAM:SSF101960	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf	InterPro:SUF_FeS_clus_asmbl_SufD	EnsemblPlantsGene:Solyc08g007010.2	EnsemblPlants:Solyc08g007010.2.1
TIGRFAMs:TIGR01981	UniParc:UPI000276C431	SEG:seg	:	:	:

Description

Protein ABCI7, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G32500) UniProtKB/Swiss-Prot;Acc:Q9LQK7]

Coordinates

chr8:-:1582945..1588341

Molecular Weight (calculated)

53666.5 Da

IEP (calculated)

6.104

GRAVY (calculated)

-0.246

Length

485 amino acids

Sequence
(BLAST)

001: MALSALSPTF STNPSASSTS LSKTRRITQK NPKFSVFTTP KFTPISALSD PYVLQIAETL EDSLPSTSST PLQKLRISSS DTLLSTPWPS RKDEPFRFTD
101: TSFIKNSRIE PIQPPSLSSL DVSVDTLLPT LSIVDGYIMD SLSQLNEFPS GVYVGSLLRV DSEAILKRVS EYEFSSKGDL FWLLNGVGTP DVVLVYVPEG
201: CKVETPLLLR YISVEGSDKE SKALPFSNPR VLVLVEKGGE ISIVEEYVGG DTDKCYWTNS VMEVVVGEGA KVSHSYIQNQ SFNAAHIKWT WVQQESTSKY
301: EHIEVSTGGK LSRHNIHIQQ VGPDTVTELS TFHMCISDQT QDLHSKLVLD HPRGVSQQIH KCIVAHSSGQ AVFDGNVQVN RYAQQTDAGQ LTRSLLLEPR
401: ATVNVKPNLQ IIADDVKCSH GAAISDLEED QLFYFRARGV DAETARKALI FSFAAEVVDR FPNASIRKKV ETHIRELLDP SRPSR

Best Arabidopsis Sequence Match ( AT1G32500.1 )
(BLAST)

001: MAAATVLGRL SLIPNLSSKP KLKSNRRTTS TSVSVRAQAS FSDPFVLQLA ESLEDSLSAS PSSSLPLQRI RDSSAETLLS TPWPSRKDEP FRFTDTSLIR
101: SSQIEPISTQ QRNSEILDNL TETQFTNAVI IDGFVSNLTI GPSDLPDGVY FGKYSGLPDE LTNRISEFIG NFDSGDLFWS INGMGAPDLM VIYVPEGCKV
201: ENPIYLRYFS GETGDRESKR LPVSNPRVFV LVEEGGEIGI VEEFVGKDEE GFYWTNPVLE VVVQKNAKLK HSYLQKESMA SAHIKWTFVR QEAESEYELV
301: EVSTGGKLGR HNVHVQQLGP DTLTELTTFH MCVNEQTLDL HSKIILDHPR GASRQLHKCI VAHSSGQAVF DGNVRVNRFA QQTNAGQLTR SLLLKPRATV
401: NIKPNLQIIA DDVKCSHGAA ISDLEEDQLF YFQARGIDLE TARRALISSF GSEVIEKFPN REIRDQARNH VKGLL

Arabidopsis Description

ABCI7At1g32500 [Source:UniProtKB/TrEMBL;Acc:Q058Q9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.