CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73913
CDY08583
CDY69136

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32500.1	CDX73913	AT3G10670.1	15184673
AT1G32500.1	CDY08583	AT3G10670.1	15184673
AT1G32500.1	CDY69136	AT3G10670.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26899	Canola	plastid	96.46	97.89
AT1G32500.1	Thale cress	mitochondrion, plastid	88.54	89.47
KRH28278	Soybean	plastid	55.0	57.89
VIT_03s0017g01730.t01	Wine grape	mitochondrion	32.92	56.63
VIT_02s0012g01050.t01	Wine grape	plastid	43.54	55.73
KRH77216	Soybean	plasma membrane	34.58	55.33
Solyc08g007010.2.1	Tomato	plastid	55.83	55.26
PGSC0003DMT400052824	Potato	plastid	56.04	55.12
GSMUA_Achr10P...	Banana	plastid	55.0	53.88
TraesCS3D01G032700.1	Wheat	plastid	44.17	44.73
TraesCS3A01G047200.1	Wheat	plastid	43.96	44.51
TraesCS3B01G035600.1	Wheat	plastid	43.96	44.33
EES02550	Sorghum	plastid	43.96	44.05
Zm00001d008549_P002	Maize	plastid	43.54	43.45
KRH63379	Soybean	cytosol	18.96	43.33
Os01t0127300-01	Rice	plasma membrane	41.67	41.49
HORVU3Hr1G004330.1	Barley	plastid	43.12	40.83
CDX91226	Canola	cytosol	11.04	22.94
CDX97313	Canola	vacuole	5.21	22.32
CDX94573	Canola	plastid	17.5	17.65
CDY16648	Canola	plastid	17.5	17.54

Protein Annotations

EnsemblPlants:CDY32277	EnsemblPlantsGene:GSBRNA2T00051733001	GO:A0A078H445	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf	InterPro:SUF_FeS_clus_asmbl_SufD
PANTHER:PTHR43575	PANTHER:PTHR43575:SF2	PFAM:PF01458	ProteinID:CDY32277	ProteinID:CDY32277.1	SEG:seg
SUPFAM:SSF101960	TIGRFAMs:TIGR01981	UniParc:UPI0004EC543A	UniProt:A0A078H445	MapMan:7.11.1.1.1.3	:

Description

BnaC05g28550DBnaC05g28550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H445]

Coordinates

chrLK032291:+:1794..3604

Molecular Weight (calculated)

53214.6 Da

IEP (calculated)

5.614

GRAVY (calculated)

-0.294

Length

480 amino acids

Sequence
(BLAST)

001: MATATVLSRL SLIPNLSSIP KSFSNKRTTP TAVSVRAQAS FSDPFVLQLA ESLEDSLSPS PSSSSSSSSL PLQRIRDSSA ESLLSTPWPS RRDEPFRFTD
101: TSFIRYSQIE PVSTQQRNSE ILDNLTETHF PNAVIIDGFV SNLTIGPSDL PDGVYFGSFS GLPDELVNRV SEFIGDFDSG DLFWSINGMG APDLTVIYVP
201: AGCKVENSIH LRYFSGQTGD RESKRLPVSN PRVFVLVEEG GEVGVVEEFV SKDEQGFYWT NPVLEVVVLK NAKVKHSYLQ KESTAAAHIK WTFVRQEAES
301: EYELVEVSTG GRLGRHNVHV QQLGPDTLTE LTTFHMCVNE QTLDLHSRIV LDHPRGSSRQ LHKCIVAHSS GQAVFDGNVR VNKYAQQTDA GQLTRSLLLK
401: PRATVNIKPN LQIIADDVKC SHGAAISDLE EDQLFYFQAR GIDLETARRA LISSFGSEVI EKFPNREIRD EARNHVKSLL

Best Arabidopsis Sequence Match ( AT1G32500.1 )
(BLAST)

001: MAAATVLGRL SLIPNLSSKP KLKSNRRTTS TSVSVRAQAS FSDPFVLQLA ESLEDSLSAS PSSSLPLQRI RDSSAETLLS TPWPSRKDEP FRFTDTSLIR
101: SSQIEPISTQ QRNSEILDNL TETQFTNAVI IDGFVSNLTI GPSDLPDGVY FGKYSGLPDE LTNRISEFIG NFDSGDLFWS INGMGAPDLM VIYVPEGCKV
201: ENPIYLRYFS GETGDRESKR LPVSNPRVFV LVEEGGEIGI VEEFVGKDEE GFYWTNPVLE VVVQKNAKLK HSYLQKESMA SAHIKWTFVR QEAESEYELV
301: EVSTGGKLGR HNVHVQQLGP DTLTELTTFH MCVNEQTLDL HSKIILDHPR GASRQLHKCI VAHSSGQAVF DGNVRVNRFA QQTNAGQLTR SLLLKPRATV
401: NIKPNLQIIA DDVKCSHGAA ISDLEEDQLF YFQARGIDLE TARRALISSF GSEVIEKFPN REIRDQARNH VKGLL

Arabidopsis Description

ABCI7At1g32500 [Source:UniProtKB/TrEMBL;Acc:Q058Q9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.