CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY26899
CDY32277

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	CDY26899	AT1G32500.1	15184673
AT3G10670.1	CDY32277	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08583	Canola	extracellular, vacuole	59.23	92.13
AT3G10670.1	Thale cress	plastid	88.1	87.57
CDY69136	Canola	plastid	63.99	75.7
Solyc06g048540.2.1	Tomato	plastid	66.37	71.47
PGSC0003DMT400070962	Potato	plastid	65.18	70.19
VIT_13s0084g00110.t01	Wine grape	plastid	65.77	68.85
KRH60123	Soybean	plastid	54.46	63.32
KRH41407	Soybean	plastid	53.57	62.28
Zm00001d029039_P001	Maize	plastid	55.65	61.72
HORVU4Hr1G050780.1	Barley	plastid	55.65	61.72
KXG39439	Sorghum	plastid	55.36	61.59
TraesCS4B01G171400.1	Wheat	plastid	56.25	61.56
TraesCS4A01G133200.1	Wheat	plastid	56.55	61.49
Os03t0332700-01	Rice	plastid	56.25	60.77
TraesCS4D01G173500.1	Wheat	plastid	56.25	60.0
GSMUA_Achr9P00290_001	Banana	plastid	39.88	52.96
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	30.65	50.49

Protein Annotations

Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	GO:A0A078CFW3	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
EnsemblPlants:CDX73913	ProteinID:CDX73913	ProteinID:CDX73913.1	InterPro:FeS-cluster_ATPase_SufC	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	EnsemblPlantsGene:GSBRNA2T00111637001
InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43204
PANTHER:PTHR43204:SF1	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01978	UniParc:UPI0004EE9570	SEG:seg

Description

BnaA03g31340D

Coordinates

chrLK031800:+:516490..518635

Molecular Weight (calculated)

36757.2 Da

IEP (calculated)

9.487

GRAVY (calculated)

-0.226

Length

336 amino acids

Sequence
(BLAST)

001: MAGANLHLRH SLSTAQFLPT FSSSSPPPPR RVQLRTSPSR ALFSNLRANS PTSRTTTRRS NTINSSSVSS PVDSDSLVAD GGEARKIPLL EVKDLRAVIV
101: ESRQEILKGV NLVVYEGEVH AVMGKNGSGK STFSKVLVGH PDYEVTGGSI VFKGKNLVDM EPEERSLAGL FMSFQSPVEI PGVSNMDFLN MAFNARKRKL
201: GQPELDPIQF YSHLVSKLEV VNMKTDFLNR NVNEGFSGGE RKRNEILQLA VLGAELAILD EIDSGLDVDA LQDVAKAVNG LLTPKNSVLM ITHYQRLLDY
301: IKPTLIHIME NGRIIKTGDN SLAKLLEKEG YKAISG

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.