CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH28278
KRH63379
KRH77216

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	KRH28278	AT1G32500.1	15184673
AT3G10670.1	KRH63379	AT1G32500.1	15184673
AT3G10670.1	KRH77216	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41407	Soybean	plastid	85.81	85.81
CDY08583	Canola	extracellular, vacuole	50.52	67.59
Solyc06g048540.2.1	Tomato	plastid	65.74	60.9
PGSC0003DMT400070962	Potato	plastid	65.4	60.58
VIT_13s0084g00110.t01	Wine grape	plastid	62.98	56.7
TraesCS4A01G133200.1	Wheat	plastid	59.17	55.34
HORVU4Hr1G050780.1	Barley	plastid	57.79	55.12
TraesCS4B01G171400.1	Wheat	plastid	58.13	54.72
CDX73913	Canola	plastid	63.32	54.46
Os03t0332700-01	Rice	plastid	58.48	54.34
AT3G10670.1	Thale cress	plastid	62.98	53.85
KXG39439	Sorghum	plastid	56.06	53.64
Zm00001d029039_P001	Maize	plastid	56.06	53.47
TraesCS4D01G173500.1	Wheat	plastid	57.79	53.02
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	35.99	50.98
CDY69136	Canola	plastid	47.06	47.89
GSMUA_Achr9P00290_001	Banana	plastid	40.14	45.85

Protein Annotations

EntrezGene:100798005	Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
EMBL:ACUP02003350	InterPro:FeS-cluster_ATPase_SufC	EnsemblPlantsGene:GLYMA_05G221600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0016887
UniProt:I1K648	InterPro:IPR003439	ProteinID:KRH60122.1	EnsemblPlants:KRH60123	ProteinID:KRH60123	ProteinID:KRH60123.1
ProteinID:KRH60124.1	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43204
PANTHER:PTHR43204:SF1	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01978	UniParc:UPI00023C4AF1	:

Description

hypothetical protein

Coordinates

chr5:-:40107183..40110738

Molecular Weight (calculated)

31663.5 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.052

Length

289 amino acids

Sequence
(BLAST)

001: MALSLPTHPS PTVNPLRRSP KPTLRRVNHR VCVASAATPL LQVNDLRAKI VESNVDILHG VNLTINQGEV HAIMGKNGSG KSTFAKVLVG HPDYEVTGGS
101: VVFKGENLLE MEPEERSLAG LFMSFQSPVE IPGVSIDLFL AMAYNARMKK LGRDEVGPIE FLPYLMEKLQ LVNMKPDFLN RNVNQGFSGG ERKRNEILQL
201: AVLGADLAIL DEIDSGLDVD ALRDVANAVN RILTPEKSLL MITHYRRILD LLNPTHVHVM DKGKIARTGD ISVVEAIESD GYEAVSALT

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.