Factsheet for Os03t0332700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0127300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	Os01t0127300-01	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G133200.1	Wheat	plastid	76.53	77.02
HORVU4Hr1G050780.1	Barley	plastid	74.6	76.57
TraesCS4B01G171400.1	Wheat	plastid	74.6	75.57
KXG39439	Sorghum	plastid	73.31	75.5
Zm00001d029039_P001	Maize	plastid	72.03	73.93
TraesCS4D01G173500.1	Wheat	plastid	74.28	73.33
CDY08583	Canola	extracellular, vacuole	45.66	65.74
Solyc06g048540.2.1	Tomato	plastid	58.84	58.65
PGSC0003DMT400070962	Potato	plastid	58.84	58.65
KRH60123	Soybean	plastid	54.34	58.48
KRH41407	Soybean	plastid	54.34	58.48
CDX73913	Canola	plastid	60.77	56.25
AT3G10670.1	Thale cress	plastid	60.77	55.92
VIT_13s0084g00110.t01	Wine grape	plastid	57.23	55.45
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	33.12	50.49
GSMUA_Achr9P00290_001	Banana	plastid	40.84	50.2
CDY69136	Canola	plastid	43.73	47.89

Protein Annotations

Gene3D:3.40.50.300	EntrezGene:4332739	MapMan:7.11.1.1.1.2	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
ProteinID:ABF95775.1	ProteinID:ABF95776.1	EMBL:AK072820	ProteinID:BAF11932.1	ProteinID:BAS84045.1	ProteinID:EAZ26810.1
InterPro:FeS-cluster_ATPase_SufC	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010027	GO:GO:0016043
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	EnsemblPlantsGene:Os03g0332700
EnsemblPlants:Os03t0332700-01	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43204
PANTHER:PTHR43204:SF1	UniProt:Q10LW5	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01978	UniParc:UPI0000DB49CB
RefSeq:XP_015633232.1	RefSeq:XP_015633233.1	SEG:seg	:	:	:

Description

ABC TRANSPORTER I FAMILY MEMBER 3_1Similar to ABC Transporter, ATP binding component. (Os03t0332700-01)

Coordinates

chr3:-:12276683..12280143

Molecular Weight (calculated)

33357.3 Da

IEP (calculated)

6.064

GRAVY (calculated)

-0.033

Length

311 amino acids

Sequence
(BLAST)

001: MAPPLAAAAA AAAAVSSSSP LFSSSSSRPL PRRHLPPSSV SLRPRRRSIA AASAAVESAG RPLLEARDLV ACVKENGQEI LSGVNLTIRE GEIHALMGQN
101: GSGKSTLMKV LAGHPEYEVT GGTVLFKGEN LIDMEPEERS LAGLFMSFQA PVEIPGVNNY DFLLMALNAR REKKGLPALE PLQVYPIIEE KVNALNMNAE
201: ILNRAVNEGF SGGERKRNEI LQLSVLGADL ALLDEIDSGL DVDALEYVAK AVNGILTPNS SLMMITHYQR LLDLIKPSYV HIMEKGKIVK TGDRALANYI
301: DESGYKAIAT A

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.