Factsheet for TraesCS4B01G171400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817
plastid: 19643044

msms PMID: 19643044 doi

DY Hou, H Xu, GY Du, JT Lin, M Duan, AG Guo

College of Life Science, Northwest A&F University, Yangling, Shaanxi 712100, P. R. China.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G047200.1
TraesCS3B01G035600.1
TraesCS3D01G032700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	TraesCS3A01G047200.1	AT1G32500.1	15184673
AT3G10670.1	TraesCS3B01G035600.1	AT1G32500.1	15184673
AT3G10670.1	TraesCS3D01G032700.1	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G050780.1	Barley	plastid	94.79	96.04
TraesCS4A01G133200.1	Wheat	plastid	96.42	95.79
TraesCS4D01G173500.1	Wheat	plastid	96.09	93.65
Zm00001d029039_P001	Maize	plastid	83.06	84.16
KXG39439	Sorghum	plastid	81.11	82.45
Os03t0332700-01	Rice	plastid	75.57	74.6
CDY08583	Canola	extracellular, vacuole	48.21	68.52
Solyc06g048540.2.1	Tomato	plastid	61.56	60.58
PGSC0003DMT400070962	Potato	plastid	61.56	60.58
KRH41407	Soybean	plastid	55.37	58.82
KRH60123	Soybean	plastid	54.72	58.13
VIT_13s0084g00110.t01	Wine grape	plastid	60.26	57.63
AT3G10670.1	Thale cress	plastid	62.54	56.8
CDX73913	Canola	plastid	61.56	56.25
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	36.16	54.41
GSMUA_Achr9P00290_001	Banana	plastid	42.02	50.99
CDY69136	Canola	plastid	43.0	46.48

Protein Annotations

Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	InterPro:FeS-cluster_ATPase_SufC
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0007275
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0010027	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR43204	PANTHER:PTHR43204:SF1	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01978	EnsemblPlantsGene:TraesCS4B01G171400
EnsemblPlants:TraesCS4B01G171400.1	TIGR:cd03217	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:+:375391753..375396435

Molecular Weight (calculated)

32982.8 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.007

Length

307 amino acids

Sequence
(BLAST)

001: MAPPFAVAAV SSSSPLFSSS SSRPILRGHP PLGYISVRPR HRSAVASAAA TESAGKLLLE VHGLTASVKE TGQQILKGVD LTIREGEVHA IMGKNGSGKS
101: TLTKVLVGHP HYEVTGGTIL FKGENLIDME PEERSLAGLF MSFQAPIEIP GVSNYDFLLM AINARREKDG LPALGPLEFY SVVSQKVEAL KMEPKILDRN
201: VNEGFSGGER KRNEILQLSV LGADLALLDE IDSGLDVDAL EDVAHAVNGL LTPQNSVLMI THYQRLLDLI KPSYVHIMES GKIVKTGDSS LASHINEGGY
301: KSIAYFV

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.