Factsheet for GSMUA_Achr9P00290_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	GSMUA_Achr10P...	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	53.36	66.18
CDY69136	Canola	plastid	52.17	46.48
Solyc06g048540.2.1	Tomato	plastid	53.75	43.59
PGSC0003DMT400070962	Potato	plastid	52.57	42.63
HORVU4Hr1G050780.1	Barley	plastid	50.99	42.57
KXG39439	Sorghum	plastid	50.59	42.38
Zm00001d029039_P001	Maize	plastid	50.59	42.24
TraesCS4B01G171400.1	Wheat	plastid	50.99	42.02
TraesCS4D01G173500.1	Wheat	plastid	52.17	41.9
TraesCS4A01G133200.1	Wheat	plastid	50.99	41.75
Os03t0332700-01	Rice	plastid	50.2	40.84
KRH41407	Soybean	plastid	46.25	40.48
KRH60123	Soybean	plastid	45.85	40.14
CDX73913	Canola	plastid	52.96	39.88
AT3G10670.1	Thale cress	plastid	50.99	38.17
CDY08583	Canola	extracellular, vacuole	32.41	37.96
VIT_13s0084g00110.t01	Wine grape	plastid	47.83	37.69
GSMUA_Achr9P00280_001	Banana	extracellular	1.58	3.23
GSMUA_Achr8P32700_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	InterPro:ABC_transporter-like	ncoils:Coil	InterPro:FeS-cluster_ATPase_SufC	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006810	GO:GO:0008150
GO:GO:0016787	GO:GO:0016887	EnsemblPlantsGene:GSMUA_Achr9G00290_001	EnsemblPlants:GSMUA_Achr9P00290_001	EnsemblPlants:GSMUA_Achr9T00290_001	InterPro:IPR003439
UniProt:M0TW86	InterPro:P-loop_NTPase	PFAM:PF00005	PANTHER:PTHR43204	PANTHER:PTHR43204:SF1	SUPFAM:SSF52540
UniParc:UPI000295433C	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G00290_001]

Coordinates

chr9:-:292422..300851

Molecular Weight (calculated)

27810.2 Da

IEP (calculated)

10.000

GRAVY (calculated)

-0.370

Length

253 amino acids

Sequence
(BLAST)

001: MALLTYSSTI PFSSSSSPSS LSSRRFPATP FRTHVSGPLN PWRFRSRLPR PHAPTRAKAT LTVDSPATGD ASSRNGPPRV LLEVKDLKAV IKESGQEILR
101: GVNLTIHGGE VHAIMGKNGS GKSTFSKVLV GHQDYDVTGG SVLFKDQNLL EMEPEERSHV GLFMSFQTPV EIPGVSNFDF LLMAFNARRK NHGLPPVEPL
201: EFYSLVTPKV ASLNMNPKFL DRNVNEGFSG GEKKRNEILQ LAYEMGGTYL SEH

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.