Factsheet for VIT_13s0084g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01050.t01
VIT_03s0017g01730.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	VIT_02s0012g01050.t01	AT1G32500.1	15184673
AT3G10670.1	VIT_03s0017g01730.t01	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08583	Canola	extracellular, vacuole	51.4	76.39
PGSC0003DMT400070962	Potato	plastid	71.65	73.72
Solyc06g048540.2.1	Tomato	plastid	71.34	73.4
CDX73913	Canola	plastid	68.85	65.77
AT3G10670.1	Thale cress	plastid	67.6	64.2
KRH60123	Soybean	plastid	56.7	62.98
KRH41407	Soybean	plastid	56.07	62.28
HORVU4Hr1G050780.1	Barley	plastid	57.94	61.39
TraesCS4A01G133200.1	Wheat	plastid	58.26	60.52
TraesCS4B01G171400.1	Wheat	plastid	57.63	60.26
KXG39439	Sorghum	plastid	55.45	58.94
Zm00001d029039_P001	Maize	plastid	55.45	58.75
TraesCS4D01G173500.1	Wheat	plastid	57.32	58.41
Os03t0332700-01	Rice	plastid	55.45	57.23
CDY69136	Canola	plastid	48.6	54.93
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	32.71	51.47
GSMUA_Achr9P00290_001	Banana	plastid	37.69	47.83

Protein Annotations

EntrezGene:100243733	wikigene:100243733	Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	EMBL:AM460503	ProteinID:CAN61388	ProteinID:CAN61388.1	ProteinID:CBI35064	ProteinID:CBI35064.3
UniProt:D7TX39	EMBL:FN596254	InterPro:FeS-cluster_ATPase_SufC	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0010027	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	EntrezGene:LOC100243733	wikigene:LOC100243733	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211
PFscan:PS50893	PANTHER:PTHR43204	PANTHER:PTHR43204:SF1	SMART:SM00382	SUPFAM:SSF52540	TIGR:TC61593
TIGRFAMs:TIGR01978	UniParc:UPI00015CCBCA	ArrayExpress:VIT_13s0084g00110	EnsemblPlantsGene:VIT_13s0084g00110	EnsemblPlants:VIT_13s0084g00110.t01	unigene:Vvi.10331
RefSeq:XP_002267203	RefSeq:XP_002267203.1	:	:	:	:

Description

No Description!

Coordinates

chr13:+:18723806..18737424

Molecular Weight (calculated)

35051.5 Da

IEP (calculated)

6.063

GRAVY (calculated)

0.024

Length

321 amino acids

Sequence
(BLAST)

001: MARFCCACSP QSSPLTFIPK SSSNFRAFTC SATRLLSIRT PSRRPLSLTA TLATVHSAEA SGVDSRDKKL LLEVKDLTAV ISESKQQILK GVNLVVYEGE
101: VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG TVVFKGENLL DMDPEERALA GLFMSFQSPV EIPGVSNIDF LNMAYNAQRR KLGLPELGPI EFYGYISPKL
201: DIVNMKIDFL NRNVNEGFSG GERKRNEILQ LAVLGADLAI LDEIDSGLDI DALKDVAKAV NGLLTPVNSV LIITHYLRLL EFIKPTYIHV MEDGRIVKTG
301: DISIAKVLEE EGYKAISEAQ L

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.