Factsheet for PGSC0003DMT400070962

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400052824

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	PGSC0003DMT400052824	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g048540.2.1	Tomato	plastid	96.79	96.79
CDY08583	Canola	extracellular, vacuole	54.17	78.24
VIT_13s0084g00110.t01	Wine grape	plastid	73.72	71.65
KRH60123	Soybean	plastid	60.58	65.4
KRH41407	Soybean	plastid	60.58	65.4
CDX73913	Canola	plastid	70.19	65.18
AT3G10670.1	Thale cress	plastid	69.55	64.2
HORVU4Hr1G050780.1	Barley	plastid	61.22	63.04
TraesCS4A01G133200.1	Wheat	plastid	61.54	62.14
TraesCS4B01G171400.1	Wheat	plastid	60.58	61.56
Zm00001d029039_P001	Maize	plastid	58.65	60.4
TraesCS4D01G173500.1	Wheat	plastid	60.9	60.32
KXG39439	Sorghum	plastid	58.33	60.26
Os03t0332700-01	Rice	plastid	58.65	58.84
CDY69136	Canola	plastid	49.68	54.58
GSMUA_Achr9P00290_001	Banana	plastid	42.63	52.57
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	33.65	51.47

Protein Annotations

EntrezGene:102591937	Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
InterPro:FeS-cluster_ATPase_SufC	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010027	GO:GO:0016043
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	UniProt:M1CN12
InterPro:P-loop_NTPase	PFAM:PF00005	EnsemblPlantsGene:PGSC0003DMG400027595	PGSC:PGSC0003DMG400027595	EnsemblPlants:PGSC0003DMT400070962	ScanProsite:PS00211
PFscan:PS50893	PANTHER:PTHR43204	PANTHER:PTHR43204:SF1	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01978
UniParc:UPI000296B501	RefSeq:XP_015168850.1	SEG:seg	:	:	:

Description

Abc transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400027595]

Coordinates

chr6:+:35093401..35097802

Molecular Weight (calculated)

34100.4 Da

IEP (calculated)

7.458

GRAVY (calculated)

-0.012

Length

312 amino acids

Sequence
(BLAST)

001: MAVFSPSCSS TSPLLSFKNN ISFFPSHRRC FPGVRCTFTV KATVSVESPS SSATDRCDDS PKVLLEVRDL CAVIVESKQQ ILNGVNLTVR QGEVHAVMGK
101: NGSGKSTFAK VLVGHPDYEI TGGTVSFKGE NLLEMEPEER SLAGLFMSFQ SPVAIPGVSN IDFLNMAYNA QRRKLGLPEL GPIEFYGYIA PKLELVNMKI
201: DFLNRNVNEG FSGGERKRNE ILQLAVLGAD LAILDEIDSG LDVDALRDVA KAVNGLLSPK NSVLMITHYL RLLEFIKPTY IHIMEKGRIV KTGDISIAKV
301: LEKEGYKAIS GP

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.