Factsheet for GSMUA_Achr8P32690_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	GSMUA_Achr10P...	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P00290_001	Banana	plastid	66.18	53.36
KXG39439	Sorghum	plastid	54.9	37.09
Zm00001d029039_P001	Maize	plastid	54.41	36.63
CDY69136	Canola	plastid	50.98	36.62
HORVU4Hr1G050780.1	Barley	plastid	53.92	36.3
TraesCS4A01G133200.1	Wheat	plastid	54.9	36.25
TraesCS4B01G171400.1	Wheat	plastid	54.41	36.16
KRH60123	Soybean	plastid	50.98	35.99
KRH41407	Soybean	plastid	50.49	35.64
TraesCS4D01G173500.1	Wheat	plastid	54.41	35.24
CDY08583	Canola	extracellular, vacuole	36.27	34.26
Solyc06g048540.2.1	Tomato	plastid	51.96	33.97
PGSC0003DMT400070962	Potato	plastid	51.47	33.65
Os03t0332700-01	Rice	plastid	50.49	33.12
VIT_13s0084g00110.t01	Wine grape	plastid	51.47	32.71
AT3G10670.1	Thale cress	plastid	51.47	31.07
CDX73913	Canola	plastid	50.49	30.65
GSMUA_Achr8P32700_001	Banana	cytosol	1.96	7.41
GSMUA_Achr9P00280_001	Banana	extracellular	3.92	6.45

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:ABC_transporter-like	InterPro:FeS-cluster_ATPase_SufC	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006810	GO:GO:0008150	GO:GO:0016787
GO:GO:0016887	EnsemblPlantsGene:GSMUA_Achr8G32690_001	EnsemblPlants:GSMUA_Achr8P32690_001	EnsemblPlants:GSMUA_Achr8T32690_001	InterPro:IPR003439	UniProt:M0TVM1
InterPro:P-loop_NTPase	PFAM:PF00005	PANTHER:PTHR43204	PANTHER:PTHR43204:SF1	SUPFAM:SSF52540	UniParc:UPI000294D903
SEG:seg	:	:	:	:	:

Description

ABC transporter I family member 6, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G32690_001]

Coordinates

chr8:+:34019821..34022547

Molecular Weight (calculated)

22742.8 Da

IEP (calculated)

8.475

GRAVY (calculated)

-0.073

Length

204 amino acids

Sequence
(BLAST)

001: MGERDAHRRL PLHGRLRLPE LPWRILLVVK DLKAVVKQSG QGNPVGGVNL TIHEGKVYAI MGKNGSGKLT FSKVLVSHPN YEVTGSSVLF KDQNLLEMEP
101: EDRSHVGLFM SFQTPVEIAG VSDFGFLLMA FTSQRSNHGL PLVEPLEFYS LVTPKVAASN MNPKFVDRNV NEIFNGGEMK WNEILQLAVC ILTLLLYDKI
201: NPSQ

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.