Factsheet for Zm00001d029039_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008549_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10670.1	Zm00001d008549_P002	AT1G32500.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39439	Sorghum	plastid	95.38	95.7
HORVU4Hr1G050780.1	Barley	plastid	83.83	83.83
TraesCS4A01G133200.1	Wheat	plastid	85.15	83.5
TraesCS4B01G171400.1	Wheat	plastid	84.16	83.06
TraesCS4D01G173500.1	Wheat	plastid	84.16	80.95
Os03t0332700-01	Rice	plastid	73.93	72.03
CDY08583	Canola	extracellular, vacuole	47.85	67.13
Solyc06g048540.2.1	Tomato	plastid	60.4	58.65
PGSC0003DMT400070962	Potato	plastid	60.4	58.65
KRH60123	Soybean	plastid	53.47	56.06
KRH41407	Soybean	plastid	53.14	55.71
CDX73913	Canola	plastid	61.72	55.65
VIT_13s0084g00110.t01	Wine grape	plastid	58.75	55.45
AT3G10670.1	Thale cress	plastid	61.72	55.33
GSMUA_Achr8P32690_001	Banana	cytosol, mitochondrion	36.63	54.41
GSMUA_Achr9P00290_001	Banana	plastid	42.24	50.59
CDY69136	Canola	plastid	42.9	45.77

Protein Annotations

EntrezGene:100273146	Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
UniProt:B4FT76	EMBL:BT040314	EMBL:BT040963	EMBL:EU966360	InterPro:FeS-cluster_ATPase_SufC	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0007275
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0010027	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	ProteinID:ONL97697.1	InterPro:P-loop_NTPase	PFAM:PF00005
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43204	PANTHER:PTHR43204:SF1	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR01978	UniParc:UPI00017B818F	EnsemblPlantsGene:Zm00001d029039	EnsemblPlants:Zm00001d029039_P001	EnsemblPlants:Zm00001d029039_T001	SEG:seg

Description

ABC transporter I family member 6 chloroplastic

Coordinates

chr1:-:55700209..55704962

Molecular Weight (calculated)

32362.9 Da

IEP (calculated)

5.393

GRAVY (calculated)

-0.006

Length

303 amino acids

Sequence
(BLAST)

001: MAPPLAAVSS SSPLFSPSSS RPIRRCHAPP PSISFQTRGR SPTAAAAAES SVSTLLEVRG LTASVKETGQ QILAGVDLTI REGEIHAIMG KNGSGKSTLT
101: KVLVGHPHYE VTGGTILFKG EDLVDMEPED RSLAGLFMSF QAPIEIPGVS NFDFLLMAVN ARRERSGLPA LGPLEFYSVV SPKVDALKMD PKFLDRNVNE
201: GFSGGERKRN EILQLSVIGA DLALLDEIDS GLDVDALEDV ANAVNGLLTP QNSVLMITHY QRLLDLIKPS YVHIMENGKI IKTGDSSIAT QINEGGFKSI
301: ALV

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.