Factsheet for Zm00001d008549_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d029039_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32500.1	Zm00001d029039_P001	AT3G10670.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02550	Sorghum	plastid	93.76	94.15
TraesCS3D01G032700.1	Wheat	plastid	74.43	75.53
TraesCS3A01G047200.1	Wheat	plastid	74.43	75.53
TraesCS3B01G035600.1	Wheat	plastid	74.43	75.21
Os01t0127300-01	Rice	plasma membrane	73.18	73.03
HORVU3Hr1G004330.1	Barley	plastid	74.84	71.01
VIT_02s0012g01060.t01	Wine grape	cytosol	13.72	51.56
KRH77216	Soybean	plasma membrane	30.77	49.33
VIT_03s0017g01730.t01	Wine grape	mitochondrion	28.48	49.1
GSMUA_Achr10P...	Banana	plastid	48.65	47.76
KRH28278	Soybean	plastid	44.28	46.71
Solyc08g007010.2.1	Tomato	plastid	44.91	44.54
CDY26899	Canola	plastid	43.66	44.4
PGSC0003DMT400052824	Potato	plastid	44.91	44.26
Bra010169.1-P	Field mustard	plastid	43.87	44.23
CDY32277	Canola	plastid	43.45	43.54
AT1G32500.1	Thale cress	mitochondrion, plastid	42.83	43.37
VIT_02s0012g01050.t01	Wine grape	plastid	32.64	41.87
KRH63379	Soybean	cytosol	14.76	33.81
Zm00001d042998_P001	Maize	plastid	10.6	21.61
Zm00001d012465_P001	Maize	plastid	13.1	20.93

Protein Annotations

EntrezGene:103634793	MapMan:7.11.1.1.1.3	ProteinID:AQK90157.1	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0010027	GO:GO:0016043	GO:GO:0016226	UniProt:K7UYC3	PFAM:PF01458
PANTHER:PTHR43575	PANTHER:PTHR43575:SF2	SUPFAM:SSF101960	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf	InterPro:SUF_FeS_clus_asmbl_SufD
UniParc:UPI000220C2F8	EnsemblPlantsGene:Zm00001d008549	EnsemblPlants:Zm00001d008549_P002	EnsemblPlants:Zm00001d008549_T002	SEG:seg	:

Description

Protein ABCI7 chloroplastic

Coordinates

chr8:+:12681105..12684611

Molecular Weight (calculated)

52459.2 Da

IEP (calculated)

6.695

GRAVY (calculated)

-0.116

Length

481 amino acids

Sequence
(BLAST)

001: MSSPSPLCAA SCSTALRAPP PPLLRFRRSY APVAASVPRT APAVSDDLVL RIAEQLEDSV TSTSPLLDPL RSASALSLLS TRWPTRRSSE AFRFTDISYL
101: RSLPISLPSR EPDLKLPSSP FSSHVLFSDG ILVSSSGAHV SALADLPPGR ARDRAAAALA AAAEFAHKDL FYDFNAVGAR DVVVVHVPEG VKVADDPIHI
201: MFAYTNSFAE SMLMSNPRVL VVAEKSAEVA IVEEHFGAGE EGGCYWANPV AEIIIDEGAR VVHSYVQHQS FAAAHTKWTV VQQDTTSKYE FVEVSTGAKL
301: NRHNLHIEQL GPETETELST LHLTSQNKQI HDLHSRLILD HPRGFSRQLH KCIACGTGNS IFDGNIKVNR YAQQTDAGQE TKCLILSPKA LVNVKPNLQI
401: IADDVKCTHG AAISGELDPN ELFYFQARGI NTETATDALL YFFGAHVIKR IPFKQITEKA LAQFKELLAS SRQTTDEALR S

Best Arabidopsis Sequence Match ( AT1G32500.1 )
(BLAST)

001: MAAATVLGRL SLIPNLSSKP KLKSNRRTTS TSVSVRAQAS FSDPFVLQLA ESLEDSLSAS PSSSLPLQRI RDSSAETLLS TPWPSRKDEP FRFTDTSLIR
101: SSQIEPISTQ QRNSEILDNL TETQFTNAVI IDGFVSNLTI GPSDLPDGVY FGKYSGLPDE LTNRISEFIG NFDSGDLFWS INGMGAPDLM VIYVPEGCKV
201: ENPIYLRYFS GETGDRESKR LPVSNPRVFV LVEEGGEIGI VEEFVGKDEE GFYWTNPVLE VVVQKNAKLK HSYLQKESMA SAHIKWTFVR QEAESEYELV
301: EVSTGGKLGR HNVHVQQLGP DTLTELTTFH MCVNEQTLDL HSKIILDHPR GASRQLHKCI VAHSSGQAVF DGNVRVNRFA QQTNAGQLTR SLLLKPRATV
401: NIKPNLQIIA DDVKCSHGAA ISDLEEDQLF YFQARGIDLE TARRALISSF GSEVIEKFPN REIRDQARNH VKGLL

Arabidopsis Description

ABCI7At1g32500 [Source:UniProtKB/TrEMBL;Acc:Q058Q9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.