Factsheet for VIT_03s0017g01730.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0084g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32500.1	VIT_13s0084g00110.t01	AT3G10670.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g01060.t01	Wine grape	cytosol	36.56	79.69
Solyc08g007010.2.1	Tomato	plastid	62.72	36.08
PGSC0003DMT400052824	Potato	plastid	62.37	35.66
CDY26899	Canola	plastid	56.63	33.4
Bra010169.1-P	Field mustard	plastid	56.63	33.12
CDY32277	Canola	plastid	56.63	32.92
VIT_10s0116g01910.t01	Wine grape	cytosol, mitochondrion	10.04	32.56
GSMUA_Achr10P...	Banana	plastid	56.99	32.45
AT1G32500.1	Thale cress	mitochondrion, plastid	55.2	32.42
VIT_02s0012g01050.t01	Wine grape	plastid	40.5	30.13
TraesCS3D01G032700.1	Wheat	plastid	50.18	29.54
TraesCS3A01G047200.1	Wheat	plastid	49.82	29.32
TraesCS3B01G035600.1	Wheat	plastid	49.82	29.2
Zm00001d008549_P002	Maize	plastid	49.1	28.48
EES02550	Sorghum	plastid	48.03	27.97
HORVU3Hr1G004330.1	Barley	plastid	49.1	27.02
Os01t0127300-01	Rice	plasma membrane	45.88	26.56
VIT_10s0116g01920.t01	Wine grape	plastid	12.54	6.88

Protein Annotations

ArrayExpress:VIT_03s0017g01730	EMBL:FN596248	EnsemblPlants:VIT_03s0017g01730.t01	EnsemblPlantsGene:VIT_03s0017g01730	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf
InterPro:SUF_FeS_clus_asmbl_SufD	PANTHER:PTHR43575	PANTHER:PTHR43575:SF2	PFAM:PF01458	ProteinID:CBI34104	ProteinID:CBI34104.3
SUPFAM:SSF101960	UniParc:UPI0001BE414E	UniProt:D7TUC9	MapMan:7.11.1.1.1.3	:	:

Description

No Description!

Coordinates

chr3:-:17891888..17906378

Molecular Weight (calculated)

31374.9 Da

IEP (calculated)

9.399

GRAVY (calculated)

-0.191

Length

279 amino acids

Sequence
(BLAST)

001: MLTTFDQFFG SFPRCIKLFG AKVKHSYIQS QSLSAAHIKW TSVQQGSSGS YELIEVSTGG KLSRHNVNIQ QVGPDTVTEL SAFHLSVGDP TQDLHTRLVL
101: DHPRGYFRQL HKCIVAHSLG QAVFDGNIKV NRYAQQTDAG QLTRSLLLEP RATVNVKPNL QIIADDVKCS HGAAISDLEE NQLFYFLARG IDLETARKTL
201: IFSFGDEVIE RLPYSSIRKK VETHIKALLE PKRFLMMSSK CFACTKQKQP RLFPACMQLD DAMLLHGSSL LYRRLQGFT

Best Arabidopsis Sequence Match ( AT1G32500.1 )
(BLAST)

001: MAAATVLGRL SLIPNLSSKP KLKSNRRTTS TSVSVRAQAS FSDPFVLQLA ESLEDSLSAS PSSSLPLQRI RDSSAETLLS TPWPSRKDEP FRFTDTSLIR
101: SSQIEPISTQ QRNSEILDNL TETQFTNAVI IDGFVSNLTI GPSDLPDGVY FGKYSGLPDE LTNRISEFIG NFDSGDLFWS INGMGAPDLM VIYVPEGCKV
201: ENPIYLRYFS GETGDRESKR LPVSNPRVFV LVEEGGEIGI VEEFVGKDEE GFYWTNPVLE VVVQKNAKLK HSYLQKESMA SAHIKWTFVR QEAESEYELV
301: EVSTGGKLGR HNVHVQQLGP DTLTELTTFH MCVNEQTLDL HSKIILDHPR GASRQLHKCI VAHSSGQAVF DGNVRVNRFA QQTNAGQLTR SLLLKPRATV
401: NIKPNLQIIA DDVKCSHGAA ISDLEEDQLF YFQARGIDLE TARRALISSF GSEVIEKFPN REIRDQARNH VKGLL

Arabidopsis Description

ABCI7At1g32500 [Source:UniProtKB/TrEMBL;Acc:Q058Q9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.