Factsheet for PGSC0003DMT400052824

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400070962

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32500.1	PGSC0003DMT400070962	AT3G10670.1	15184673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007010.2.1	Tomato	plastid	98.16	98.76
VIT_02s0012g01060.t01	Wine grape	cytosol	17.83	67.97
VIT_03s0017g01730.t01	Wine grape	mitochondrion	35.66	62.37
VIT_02s0012g01050.t01	Wine grape	plastid	47.34	61.6
AT1G32500.1	Thale cress	mitochondrion, plastid	56.15	57.68
KRH28278	Soybean	plastid	53.89	57.68
KRH77216	Soybean	plasma membrane	35.25	57.33
CDY26899	Canola	plastid	55.12	56.87
Bra010169.1-P	Field mustard	plastid	55.33	56.6
CDY32277	Canola	plastid	55.12	56.04
GSMUA_Achr10P...	Banana	plastid	54.3	54.08
TraesCS3B01G035600.1	Wheat	plastid	46.11	47.27
TraesCS3D01G032700.1	Wheat	plastid	45.9	47.26
TraesCS3A01G047200.1	Wheat	plastid	45.7	47.05
Zm00001d008549_P002	Maize	plastid	44.26	44.91
KRH63379	Soybean	cytosol	19.26	44.76
EES02550	Sorghum	plastid	43.65	44.47
HORVU3Hr1G004330.1	Barley	plastid	45.9	44.18
Os01t0127300-01	Rice	plasma membrane	43.03	43.57
PGSC0003DMT400013035	Potato	plastid	18.44	16.42
PGSC0003DMT400042503	Potato	plastid	17.42	15.57

Protein Annotations

EntrezGene:102599443	MapMan:7.11.1.1.1.3	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0010027	GO:GO:0016043	GO:GO:0016226	UniProt:M1BU13	PFAM:PF01458	EnsemblPlantsGene:PGSC0003DMG400020501
PGSC:PGSC0003DMG400020501	EnsemblPlants:PGSC0003DMT400052824	PANTHER:PTHR43575	PANTHER:PTHR43575:SF2	SUPFAM:SSF101960	InterPro:SUF_FeS_clus_asmbl_SufBD
InterPro:SUF_FeS_clus_asmbl_SufBD_sf	InterPro:SUF_FeS_clus_asmbl_SufD	TIGRFAMs:TIGR01981	UniParc:UPI0002969DEA	RefSeq:XP_006362498.1	SEG:seg

Description

Protein sufD [Source:PGSC_GENE;Acc:PGSC0003DMG400020501]

Coordinates

chr8:+:1233882..1239019

Molecular Weight (calculated)

54096.1 Da

IEP (calculated)

6.247

GRAVY (calculated)

-0.253

Length

488 amino acids

Sequence
(BLAST)

001: MALSALSPTF STNPSASSTS LSKTRRITQK NPKFSVFTTP KFTPISALSD PYVLQIAETL EDSLPSTSST PLQKLRISSS DTLLSTPWPS RKDEPFRFTD
101: TSFIKNSRIE PIQPPKIPSL SSLDISVDTL LPTLTIVDGY IMDSLSQLNE FPSGVYVGSL LRVDSEAIMK RVSEYEFSFK GDLFWLLNGV GTPDVVLVYV
201: PEGCKVENPL LLRYISAEGS DKESKALPFS NPRVLVLVEK GGEISIVEEY VGGDTDKCYW TNSVMEVVVG EGAKVSHSYI QNQSFNAAHI KWTWVQQEST
301: SKYEHIEVST GGKLSRHNIH IQQVGPDTVT ELSTFHMCIS DQTQDLHSKL VLDHPRGVSQ QIHKCIVAHS SGQAVFDGNV QVNRYAQQTD AGQLTRSLLL
401: EPRATVNVKP NLQIIADDVK CSHGAAISDL EEDQLFYFRA RGVDAETARK ALIFSFAAEV VDRFPNASIR KKVETHIREL LDPSRPSR

Best Arabidopsis Sequence Match ( AT1G32500.1 )
(BLAST)

001: MAAATVLGRL SLIPNLSSKP KLKSNRRTTS TSVSVRAQAS FSDPFVLQLA ESLEDSLSAS PSSSLPLQRI RDSSAETLLS TPWPSRKDEP FRFTDTSLIR
101: SSQIEPISTQ QRNSEILDNL TETQFTNAVI IDGFVSNLTI GPSDLPDGVY FGKYSGLPDE LTNRISEFIG NFDSGDLFWS INGMGAPDLM VIYVPEGCKV
201: ENPIYLRYFS GETGDRESKR LPVSNPRVFV LVEEGGEIGI VEEFVGKDEE GFYWTNPVLE VVVQKNAKLK HSYLQKESMA SAHIKWTFVR QEAESEYELV
301: EVSTGGKLGR HNVHVQQLGP DTLTELTTFH MCVNEQTLDL HSKIILDHPR GASRQLHKCI VAHSSGQAVF DGNVRVNRFA QQTNAGQLTR SLLLKPRATV
401: NIKPNLQIIA DDVKCSHGAA ISDLEEDQLF YFQARGIDLE TARRALISSF GSEVIEKFPN REIRDQARNH VKGLL

Arabidopsis Description

ABCI7At1g32500 [Source:UniProtKB/TrEMBL;Acc:Q058Q9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.