Factsheet for PGSC0003DMT400013035

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004769
PGSC0003DMT400004770
PGSC0003DMT400004772
PGSC0003DMT400004773
PGSC0003DMT400056116

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04770.1	PGSC0003DMT400004769	AT5G10210.1	21798944
AT4G04770.1	PGSC0003DMT400004770	AT5G10210.1	21798944
AT4G04770.1	PGSC0003DMT400004772	AT5G10210.1	21798944
AT4G04770.1	PGSC0003DMT400004773	AT5G10210.1	21798944
AT4G04770.1	PGSC0003DMT400056116	AT5G10210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g031700.2.1	Tomato	plastid	98.18	98.18
PGSC0003DMT400042503	Potato	plastid	88.87	89.19
GSMUA_Achr3P14230_001	Banana	cytosol	38.14	81.96
VIT_10s0116g01910.t01	Wine grape	cytosol, mitochondrion	12.77	81.4
CDX91226	Canola	cytosol	33.39	79.22
KRH13114	Soybean	cytosol, plastid	12.04	78.57
KRH03586	Soybean	plastid	74.45	76.98
Bra029516.1-P	Field mustard	plastid	77.19	76.63
AT4G04770.1	Thale cress	plastid	77.74	76.48
GSMUA_Achr1P17690_001	Banana	mitochondrion	46.35	75.82
KRH20223	Soybean	plastid	75.18	75.74
VIT_10s0116g01920.t01	Wine grape	plastid	67.7	72.89
TraesCS3D01G343800.1	Wheat	plastid	65.51	69.98
EES03828	Sorghum	plastid	67.34	68.08
Os01t0830000-01	Rice	plasma membrane, plastid	67.34	67.83
TraesCS3A01G349800.1	Wheat	plastid	66.79	67.28
TraesCS3B01G382400.1	Wheat	plastid	66.42	67.16
AT5G44316.1	Thale cress	plastid	56.75	66.17
Zm00001d012465_P001	Maize	plastid	34.85	63.46
Zm00001d042998_P001	Maize	plastid	24.45	56.78
HORVU3Hr1G087860.1	Barley	plastid	66.79	56.05
CDX97313	Canola	vacuole	9.12	44.64
PGSC0003DMT400052824	Potato	plastid	16.42	18.44

Protein Annotations

EnsemblPlants:PGSC0003DMT400013035	EnsemblPlantsGene:PGSC0003DMG400005080	EntrezGene:102590382	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	InterPro:SUF_FeS_clus_asmbl_SufB	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf
PANTHER:PTHR30508	PANTHER:PTHR30508:SF1	PFAM:PF01458	PGSC:PGSC0003DMG400005080	RefSeq:XP_006343292.1	SUPFAM:SSF101960
TIGRFAMs:TIGR01980	UniParc:UPI00029490A1	UniProt:M1A271	MapMan:7.11.1.1.1.1	:	:

Description

Non-intrinsic ABC protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005080]

Coordinates

chr3:-:2564780..2568684

Molecular Weight (calculated)

61273.4 Da

IEP (calculated)

6.061

GRAVY (calculated)

-0.441

Length

548 amino acids

Sequence
(BLAST)

001: MASLLTNGIS CFSPQPITEQ PKLPKGSQFL LKLANPRNPN SRILKVKAAE LSYEATIDTP GKESSVSTSN ENDPLQKFLK RDYKWGFNQE IDSFSLPKGL
101: SAETVKLISG RKNEPSWMLE FRLKSYEKFL KMKEPKWSDN KYPEISFQDI CYYSEPKKKP TLNSLDEADP ELIKYFEKLG IPLNERNRLA NVAVDAVLDS
201: VSIATTHRKT LEKSGVIFCS ISEAIREYPD LVKKYLGRVV PPEDNFYAAL NSAVFSDGSF VYIPKNTRCP MQISTYFRIN AMETGQFERT VIIAEEGSFV
301: EYLEGCTAPS YDTNQLHAAV VELYCHEGAE IKYSTVQNWY AGDEEGVGGI YNFVTKRGIC AGARSKISWT QVETGSAITW KYPSVVLEGD ESVGEFYSVA
401: LTNNYQQADT GTKMIHKGKN TRSRIISKGI SAGHSRNCYR GLVQVLSSAD NAKNSSQCDS MLIGDTAAAN TYPYIQSKNP TARMEHEATT SKIGEDQLFY
501: FQQRGIDYEK AMAAMISGFC RDVFNELPDE FGAEVNQLMS LKLEGSVG

Best Arabidopsis Sequence Match ( AT4G04770.1 )
(BLAST)

001: MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI
101: DSFTIPKGLS EETIRLISKL KEEPDWMLEF RFKAYAKFLK LEEPKWSDNR YPSINFQDMC YYSAPKKKPT LNSLDEVDPQ LLEYFDKLGV PLTEQKRLAN
201: VAVDAVIDSV SIATTHRKTL EKSGVIFCSI SEAIREYPDL IKKYLGRVVP SDDNYYAALN SAVFSDGSFC YIPKNTRCPM PISTYFRINA METGQFERTL
301: IVAEEGSFVE YLEGCTAPSY DTNQLHAAVV ELYCGKGAEI KYSTVQNWYA GDEQGKGGIY NFVTKRGLCA GDRSKISWTQ VETGSAITWK YPSVVLEGDD
401: SVGEFYSVAL TNNYQQADTG TKMIHKGKNT KSRIISKGIS AGHSRNCYRG LVQVQSKAEG AKNTSTCDSM LIGDKAAANT YPYIQVKNPS AKVEHEASTS
501: KIGEDQLFYF QQRGIDHERA LAAMISGFCR DVFNKLPDEF GAEVNQLMSI KLEGSVG

Arabidopsis Description

ABCI8UPF0051 protein ABCI8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZS97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.