Factsheet for PGSC0003DMT400004773

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008587
PGSC0003DMT400008605
PGSC0003DMT400013977
PGSC0003DMT400050859
PGSC0003DMT400055203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10210.1	PGSC0003DMT400008587	AT2G22810.1	21798944
AT5G10210.1	PGSC0003DMT400008605	AT2G22810.1	21798944
AT5G10210.1	PGSC0003DMT400013977	AT2G22810.1	21798944
AT5G10210.1	PGSC0003DMT400055203	AT2G22810.1	21798944
AT5G10210.1	PGSC0003DMT400050859	AT2G41120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004769	Potato	cytosol	56.91	87.5
Solyc04g055130.1.1	Tomato	nucleus	85.37	82.03
PGSC0003DMT400004770	Potato	cytosol	86.18	79.7
PGSC0003DMT400004772	Potato	cytosol	91.87	55.12
PGSC0003DMT400056116	Potato	cytosol	48.78	30.77
KRG97587	Soybean	nucleus	37.4	23.35
KRH31287	Soybean	cytosol	34.96	21.5
AT5G65030.1	Thale cress	mitochondrion, nucleus	34.15	20.79
CDX69854	Canola	cytosol, nucleus, plastid	32.52	20.73
AT5G10210.1	Thale cress	cytosol	32.52	20.3
CDY14531	Canola	cytosol	32.52	20.1
Bra024347.1-P	Field mustard	cytosol	31.71	19.6
CDX96983	Canola	cytosol	30.08	19.17
Bra009050.1-P	Field mustard	cytosol	14.63	14.17

Protein Annotations

EnsemblPlants:PGSC0003DMT400004773	EnsemblPlantsGene:PGSC0003DMG400001892	PANTHER:PTHR35503	PANTHER:PTHR35503:SF2	PGSC:PGSC0003DMG400001892	UniParc:UPI000296333B
UniProt:M0ZNY1	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001892]

Coordinates

chr4:-:50960252..50960623

Molecular Weight (calculated)

13896.9 Da

IEP (calculated)

8.498

GRAVY (calculated)

-0.227

Length

123 amino acids

Sequence
(BLAST)

001: MKQGTVVFEL RSRRHLPWKN IGGSQVLGRV EIPLKRIFES TRMEIEEWAI FMTTSKNINE DVKPPAVKIA MKVNVNETTK INKLRRSWDE SCACKGYCGC
101: NSNSIFSADD CEIFAIGAAL DVL

Best Arabidopsis Sequence Match ( AT5G10210.1 )
(BLAST)

001: MGIVENIRSL KFEVKIVEAR NVELKSSPTT LFVRFYLHAG NNSKIELNTP EIRSRSDCEV ISWNQSFGLE CQGNETAVEE LKQQSVVFEL RRRKTTPFLK
101: KWSKSELVGR GKIFWKSVIE TDGMEIERFV VMDETKDHVL EDCDKHKPLL LKIALKVQAS KIVNTKRVED LCECKDCRTC NCVDYEAFVV ACALAGI

Arabidopsis Description

At5g10210 [Source:UniProtKB/TrEMBL;Acc:Q9LX09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.