Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10210.1 | CDX89520 | AT2G22810.1 | 21798944 |
| AT5G10210.1 | CDY25639 | AT2G22810.1 | 21798944 |
| AT5G10210.1 | CDY06945 | AT2G41120.1 | 21798944 |
| AT5G10210.1 | CDY57582 | AT2G41120.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009050.1-P | Field mustard | cytosol | 64.25 | 97.64 |
| CDX96983 | Canola | cytosol | 93.26 | 93.26 |
| AT5G10210.1 | Thale cress | cytosol | 78.76 | 77.16 |
| CDY14531 | Canola | cytosol | 62.69 | 60.8 |
| KRG97587 | Soybean | nucleus | 37.31 | 36.55 |
| KRH31287 | Soybean | cytosol | 35.75 | 34.5 |
| PGSC0003DMT400056116 | Potato | cytosol | 34.72 | 34.36 |
| PGSC0003DMT400004772 | Potato | cytosol | 35.75 | 33.66 |
| Solyc04g055130.1.1 | Tomato | nucleus | 21.76 | 32.81 |
| Solyc03g078620.1.1 | Tomato | cytosol | 34.2 | 32.67 |
| PGSC0003DMT400004773 | Potato | cytosol | 20.73 | 32.52 |
| PGSC0003DMT400004770 | Potato | cytosol | 22.28 | 32.33 |
| Solyc04g055140.1.1 | Tomato | cytosol | 21.24 | 30.37 |
| Solyc04g055150.1.1 | Tomato | nucleus | 20.73 | 29.63 |
| PGSC0003DMT400004769 | Potato | cytosol | 11.4 | 27.5 |
Protein Annotations
| EnsemblPlants:CDX69854 | EnsemblPlantsGene:GSBRNA2T00135914001 | Gene3D:2.60.40.150 | InterPro:C2_domain_sf | InterPro:IPR035892 | PANTHER:PTHR35503 |
| PANTHER:PTHR35503:SF2 | ProteinID:CDX69854 | ProteinID:CDX69854.1 | SUPFAM:SSF49562 | UniParc:UPI0004EE94A0 | MapMan:35.2 |
Description
BnaA10g22030D
Coordinates
chrLK031790:-:2105179..2105760
Molecular Weight (calculated)
21955.5 Da
IEP (calculated)
5.215
GRAVY (calculated)
-0.302
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIVRNLCSL KFEVKVVEAR NVELKSSPSS LFVRFYLHAG SNRKVELNST EICSRPDNEV MIWNQSFGLE CQGDETAVEE LKQESVVFEL RRRKTTSFMS
101: KWSRSELVGR GEVPWKSVME SDGMEIERFV VMCEKKDEED CNKPLMLKIG LKLQASKLVN TKRVEDLCGC KDCKTCDCLD YEAFAVACAL DGI
101: KWSRSELVGR GEVPWKSVME SDGMEIERFV VMCEKKDEED CNKPLMLKIG LKLQASKLVN TKRVEDLCGC KDCKTCDCLD YEAFAVACAL DGI
001: MGIVENIRSL KFEVKIVEAR NVELKSSPTT LFVRFYLHAG NNSKIELNTP EIRSRSDCEV ISWNQSFGLE CQGNETAVEE LKQQSVVFEL RRRKTTPFLK
101: KWSKSELVGR GKIFWKSVIE TDGMEIERFV VMDETKDHVL EDCDKHKPLL LKIALKVQAS KIVNTKRVED LCECKDCRTC NCVDYEAFVV ACALAGI
101: KWSKSELVGR GKIFWKSVIE TDGMEIERFV VMDETKDHVL EDCDKHKPLL LKIALKVQAS KIVNTKRVED LCECKDCRTC NCVDYEAFVV ACALAGI
Arabidopsis Description
At5g10210 [Source:UniProtKB/TrEMBL;Acc:Q9LX09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.