Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra016952.1-P | |
| Bra030199.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10210.1 | Bra030199.1-P | AT2G22810.1 | 21798944 |
| AT5G10210.1 | Bra016952.1-P | AT2G41120.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69854 | Canola | cytosol, nucleus, plastid | 97.64 | 64.25 |
| CDX96983 | Canola | cytosol | 89.76 | 59.07 |
| AT5G10210.1 | Thale cress | cytosol | 76.38 | 49.24 |
| Bra024347.1-P | Field mustard | cytosol | 64.57 | 41.21 |
| KRG97587 | Soybean | nucleus | 40.94 | 26.4 |
| KRH31287 | Soybean | cytosol | 40.16 | 25.5 |
| PGSC0003DMT400056116 | Potato | cytosol | 38.58 | 25.13 |
| Solyc03g078620.1.1 | Tomato | cytosol | 37.8 | 23.76 |
| PGSC0003DMT400004772 | Potato | cytosol | 37.8 | 23.41 |
| Solyc04g055130.1.1 | Tomato | nucleus | 14.96 | 14.84 |
| PGSC0003DMT400004773 | Potato | cytosol | 14.17 | 14.63 |
| PGSC0003DMT400004770 | Potato | cytosol | 14.96 | 14.29 |
| Solyc04g055140.1.1 | Tomato | cytosol | 14.17 | 13.33 |
| Solyc04g055150.1.1 | Tomato | nucleus | 14.17 | 13.33 |
| PGSC0003DMT400004769 | Potato | cytosol | 0.79 | 1.25 |
Protein Annotations
| EnsemblPlants:Bra009050.1 | EnsemblPlants:Bra009050.1-P | EnsemblPlantsGene:Bra009050 | Gene3D:2.60.40.150 | InterPro:C2_domain_sf | InterPro:IPR035892 |
| PANTHER:PTHR35503 | PANTHER:PTHR35503:SF2 | SUPFAM:SSF49562 | UniParc:UPI0002544890 | UniProt:M4CXV3 | MapMan:35.2 |
Description
AT5G10210 (E=3e-052) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65030.1); Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA10:-:15028334..15028717
Molecular Weight (calculated)
14596.5 Da
IEP (calculated)
8.049
GRAVY (calculated)
-0.447
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIVRNLCSL KFEVKVVEAR NVELKSSPSS LFVRFYLHAG SNRKVELNST EICSRPDNEV MIWNQSFGLE CQGDETAVEE LKQESVVFEL RRRKTTSFMS
101: KWSRSELVGR GEVPWKSVME SDGMGWK
101: KWSRSELVGR GEVPWKSVME SDGMGWK
001: MGIVENIRSL KFEVKIVEAR NVELKSSPTT LFVRFYLHAG NNSKIELNTP EIRSRSDCEV ISWNQSFGLE CQGNETAVEE LKQQSVVFEL RRRKTTPFLK
101: KWSKSELVGR GKIFWKSVIE TDGMEIERFV VMDETKDHVL EDCDKHKPLL LKIALKVQAS KIVNTKRVED LCECKDCRTC NCVDYEAFVV ACALAGI
101: KWSKSELVGR GKIFWKSVIE TDGMEIERFV VMDETKDHVL EDCDKHKPLL LKIALKVQAS KIVNTKRVED LCECKDCRTC NCVDYEAFVV ACALAGI
Arabidopsis Description
At5g10210 [Source:UniProtKB/TrEMBL;Acc:Q9LX09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.