CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94998
KRH04373
KRH28319
KRH58165
KRH66630
KRH66631
KRH77167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10210.1	KRH04373	AT2G22810.1	21798944
AT5G10210.1	KRH28319	AT2G22810.1	21798944
AT5G10210.1	KRH58165	AT2G22810.1	21798944
AT5G10210.1	KRH77167	AT2G22810.1	21798944
AT5G10210.1	KRG94998	AT2G41120.1	21798944
AT5G10210.1	KRH66630	AT2G41120.1	21798944
AT5G10210.1	KRH66631	AT2G41120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31287	Soybean	cytosol	85.79	84.5
Bra009050.1-P	Field mustard	cytosol	26.4	40.94
PGSC0003DMT400004772	Potato	cytosol	41.12	39.51
PGSC0003DMT400004773	Potato	cytosol	23.35	37.4
CDX69854	Canola	cytosol, nucleus, plastid	36.55	37.31
PGSC0003DMT400056116	Potato	cytosol	36.55	36.92
CDX96983	Canola	cytosol	36.04	36.79
PGSC0003DMT400004770	Potato	cytosol	24.37	36.09
Solyc04g055130.1.1	Tomato	nucleus	22.84	35.16
AT5G10210.1	Thale cress	cytosol	35.03	35.03
PGSC0003DMT400004769	Potato	cytosol	14.21	35.0
Solyc03g078620.1.1	Tomato	cytosol	35.53	34.65
Solyc04g055140.1.1	Tomato	cytosol	23.35	34.07
CDY14531	Canola	cytosol	34.01	33.67
AT5G65030.1	Thale cress	mitochondrion, nucleus	34.52	33.66
Bra024347.1-P	Field mustard	cytosol	32.99	32.66
Solyc04g055150.1.1	Tomato	nucleus	22.34	32.59

Protein Annotations

EMBL:ACUP02010800	EnsemblPlants:KRG97587	EnsemblPlantsGene:GLYMA_18G017500	EntrezGene:100807677	Gene3D:2.60.40.150	InterPro:C2_dom
InterPro:C2_domain_sf	InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR35503	PANTHER:PTHR35503:SF2	PFAM:PF00168
ProteinID:KRG97587	ProteinID:KRG97587.1	SEG:seg	SUPFAM:SSF49562	UniParc:UPI000233EB31	UniProt:I1MYS7
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:1243652..1244874

Molecular Weight (calculated)

22799.2 Da

IEP (calculated)

7.770

GRAVY (calculated)

-0.539

Length

197 amino acids

Sequence
(BLAST)

001: MDHSHKLPSF SCELRIIQAQ NVESIKSTKN LFTRLYLPAG SNKRIQLNTK KVSSNTKYVP FWNESFNLNC SCPQEFLEGL KKESLVVELR QSKIWGSHVV
101: GKGEIPWKAI FESPNMEFKE WVKMDLVSGI DCEDVMFKAP QVQVEIKIQV EKENNNRRKR LNNRWDECGC KQGHDQHAWC SAEDYDIFAL GAVLEAF

Best Arabidopsis Sequence Match ( AT5G65030.1 )
(BLAST)

001: MGVMEKKLRS LKCQVRIVEA RNVEIKSQAS TLFVRFYLSA GHNRKIEVNT RELSSKSDQL MWDQSFGLEC QGDEAAVKEL KQQRVVFELR RKKISTFLRK
101: SSKSEVVGRG EVSWESVFES PGMEIERLVV MGESKNWVLE DERPLLLKIA LKVQALEEME KMLIKNDKKT EKLCCVCSSR DCGSCSCLDY EAFALVCALD
201: CI

Arabidopsis Description

At5g65030 [Source:UniProtKB/TrEMBL;Acc:Q9LV76]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.