CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95578
KRG98245
KRH04373
KRH09670
KRH17084
KRH27892
KRH28319
KRH30203
KRH32058
KRH41241
KRH41440
KRH49039
KRH58165
KRH59970
KRH60148
KRH67265
KRH71376
KRH72722
KRH74169
KRH77167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22810.1	KRH09670	AT1G80650.1	21798944
AT2G22810.1	KRH04373	AT2G22810.1	14983000
AT2G22810.1	KRH28319	AT2G22810.1	14983000
AT2G22810.1	KRH58165	AT2G22810.1	14983000
AT2G22810.1	KRH77167	AT2G22810.1	14983000
AT2G22810.1	KRH27892	AT4G11280.1	14983000
AT2G22810.1	KRH41241	AT4G11280.1	14983000
AT2G22810.1	KRH59970	AT4G11280.1	14983000
AT2G22810.1	KRH41440	AT4G26200.1	14983000
AT2G22810.1	KRH49039	AT4G26200.1	14983000
AT2G22810.1	KRH60148	AT4G26200.1	14983000
AT2G22810.1	KRH74169	AT4G26200.1	14983000
AT2G22810.1	KRH04373	AT4G37770.1	14983000
AT2G22810.1	KRH28319	AT4G37770.1	14983000
AT2G22810.1	KRH58165	AT4G37770.1	14983000
AT2G22810.1	KRH77167	AT4G37770.1	14983000
AT4G37770.1	KRH04373	AT2G22810.1	14983000
AT4G37770.1	KRH28319	AT2G22810.1	14983000
AT4G37770.1	KRH58165	AT2G22810.1	14983000
AT4G37770.1	KRH77167	AT2G22810.1	14983000
AT4G37770.1	KRH04373	AT4G37770.1	14983000
AT4G37770.1	KRH28319	AT4G37770.1	14983000
AT4G37770.1	KRH58165	AT4G37770.1	14983000
AT4G37770.1	KRH77167	AT4G37770.1	14983000
AT5G65800.1	KRG95578	AT4G02680.1	15118728
AT5G65800.1	KRH32058	AT4G02680.1	15118728
AT5G65800.1	KRH67265	AT4G02680.1	15118728
AT5G65800.1	KRH71376	AT4G02680.1	15118728
AT5G65800.1	KRG98245	AT5G58550.1	15118728
AT5G65800.1	KRH17084	AT5G58550.1	15118728
AT5G65800.1	KRH30203	AT5G58550.1	15118728
AT5G65800.1	KRH72722	AT5G58550.1	15118728

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04373	Soybean	cytosol	94.17	95.16
KRH28319	Soybean	cytosol	83.75	85.35
KRH77167	Soybean	cytosol	82.92	84.68
Solyc02g063540.1.1	Tomato	cytosol	45.62	77.11
VIT_00s1437g00010.t01	Wine grape	cytosol	75.0	76.76
VIT_00s0840g00010.t01	Wine grape	cytosol	74.79	76.55
PGSC0003DMT400055203	Potato	cytosol	74.38	76.12
Solyc02g091990.2.1	Tomato	cytosol	74.17	75.91
CDY66472	Canola	cytosol	63.12	75.19
PGSC0003DMT400008587	Potato	cytosol	71.67	74.62
CDX75675	Canola	cytosol	70.0	74.5
Solyc03g043890.2.1	Tomato	cytosol	72.29	73.67
PGSC0003DMT400008605	Potato	cytosol	64.79	73.52
Bra017962.1-P	Field mustard	cytosol	71.46	72.98
CDY08163	Canola	cytosol	71.46	72.98
GSMUA_Achr2P08600_001	Banana	cytosol	70.0	72.57
Bra012924.1-P	Field mustard	cytosol	71.04	72.55
CDY02111	Canola	cytosol	71.04	72.55
CDX69326	Canola	cytosol	70.83	72.49
Bra011784.1-P	Field mustard	cytosol	70.83	72.49
AT3G49700.1	Thale cress	cytosol	70.83	72.34
CDY05953	Canola	cytosol	70.83	72.34
CDY23035	Canola	cytosol	70.21	72.32
GSMUA_Achr5P08880_001	Banana	cytosol	70.0	72.1
Bra010611.1-P	Field mustard	cytosol	70.42	72.07
CDY69462	Canola	cytosol	70.21	71.86
AT4G37770.1	Thale cress	cytosol	70.21	71.86
GSMUA_Achr1P14280_001	Banana	nucleus	68.12	71.55
Bra030199.1-P	Field mustard	cytosol	70.62	71.52
AT5G65800.1	Thale cress	cytosol	70.0	71.49
CDX89520	Canola	cytosol	70.42	71.31
CDY25639	Canola	cytosol	70.42	71.31
Bra031846.1-P	Field mustard	cytosol	69.79	71.28
GSMUA_Achr3P25830_001	Banana	mitochondrion	66.67	71.27
PGSC0003DMT400013977	Potato	cytosol	55.21	71.05
CDX81296	Canola	cytosol	64.79	70.84
Bra037829.1-P	Field mustard	cytosol	64.58	70.61
CDY18674	Canola	cytosol	64.58	70.61
GSMUA_Achr4P01340_001	Banana	mitochondrion	67.92	70.56
Bra024420.1-P	Field mustard	cytosol	68.96	70.43
GSMUA_Achr1P04420_001	Banana	cytosol	67.5	70.13
AT2G22810.1	Thale cress	cytosol	69.17	70.04
KRH61460	Soybean	cytosol	49.17	67.43
KRH52156	Soybean	cytosol	63.54	65.31
Os03t0727600-01	Rice	cytosol	65.21	64.27
TraesCS4A01G256500.1	Wheat	cytosol	64.58	63.92
TraesCS4B01G058200.1	Wheat	cytosol	64.58	63.92
TraesCS4D01G058200.1	Wheat	cytosol	64.17	63.51
Zm00001d033862_P001	Maize	cytosol	63.75	63.09
EER90948	Sorghum	cytosol	63.96	61.77
KRH41440	Soybean	cytosol	53.96	58.86
KRH60148	Soybean	cytosol	52.92	57.73
KRH74169	Soybean	cytosol	52.71	56.73
KRH49039	Soybean	cytosol	52.5	56.5
HORVU4Hr1G009800.5	Barley	cytosol, plastid	64.58	54.29
KRH27892	Soybean	cytosol	52.08	52.08
KRH41241	Soybean	cytosol	51.88	51.45
KRH59970	Soybean	cytosol	51.67	51.24
KRH06585	Soybean	cytosol	48.54	49.16
KRH00855	Soybean	cytosol	48.96	48.96
KRH48058	Soybean	cytosol	48.33	48.95
KRH40379	Soybean	cytosol	47.71	47.22
KRH65284	Soybean	cytosol	11.46	44.72
KRH09217	Soybean	plastid	39.58	35.98
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	37.29	35.73
KRH38710	Soybean	plastid	39.38	35.73
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	36.88	35.26
KRH69622	Soybean	cytosol	20.0	19.96
KRH74536	Soybean	cytosol	19.79	19.75
KRH06285	Soybean	mitochondrion	20.42	18.28
KRH47719	Soybean	endoplasmic reticulum	20.42	18.11

Protein Annotations

EntrezGene:100790271	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02003206	InterPro:Aminotransferase_I/II
EnsemblPlantsGene:GLYMA_05G108900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0030170	UniProt:I1K2H0	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH58165
ProteinID:KRH58165	ProteinID:KRH58165.1	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105
PANTHER:PTHR43795	PANTHER:PTHR43795:SF10	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI00023C48F5	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:28858965..28861063

Molecular Weight (calculated)

54057.7 Da

IEP (calculated)

9.000

GRAVY (calculated)

-0.318

Length

480 amino acids

Sequence
(BLAST)

001: MRLLSTKATC NSHGQDSSYF LGWQEYEKNP YDKVHNPKGI IQMGLAENQL SFDLLESWLA KNLDVAGFKR DGKTIFRELA LFQDYHGLPS FKKALVDFMA
101: EIRGNKVTFD PNHIVLTAGA TSANETLMFC LAEQGEAFLL PTPYYPGFDR DLKWRTGVEI VPIQCNSSNS FQITEAALRQ AYEDAKKRNL RVKGVLVTNP
201: SNPLGTTMSR SELNLLVDFI KEKNDMHLIS DEIYSGTVFS SPGFVSVMEV LKERNDVVTD NGVWNRVHVV YSLSKDLGLP GFRVGAIYSE NDTVVAAATK
301: MSSFGLVSSQ TQYLLSAMLG DKKFTRNYIA ENKKRLKRQQ RMLVSGLLKT GISCLDSNAG LFCWVDMRQL LHSNTFKAEM ELWKKIVYQV GLNISPGSSC
401: HCTEPGWFRV CFANMSEETL ALAMKRLKNF VAAESQRNSS SGCSAGALLN NNNGSFKRKS LTKWVFRLSS RDHHREQEER

Best Arabidopsis Sequence Match ( AT4G37770.1 )
(BLAST)

001: MGLLSKKASC NTHGQDSSYF WGWEEYEKNP YDEIKNPDGI IQMGLAENQL SFDLIESWLA KNPDAANFQR EGQSIFRELA LFQDYHGLPS FKNAMADFMS
101: ENRGNRVSFN PNKLVLTAGA TPANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGAEI VPIQCKSANG FRITKVALEE AYEQAQKLNL KVKGVLITNP
201: SNPLGTTTTR TELNHLLDFI SRKKIHLISD EIYSGTVFTN PGFISVMEVL KDRKLENTDV FDRVHIVYSL SKDLGLPGFR VGVIYSNDDF VVSAATKMSS
301: FGLISSQTQY LLSALLSDKT FTKNYLEENQ IRLKNRHKKL VSGLEAAGIE CLKSNAGLFC WVDMRHLLKS NTFEAEIELW KKIVYEVKLN ISPGSSCHCN
401: EPGWFRVCFA NLSEETLKVA LDRLKRFVDG PSPTRRSQSE HQRLKNLRKM KVSNWVFRLS FHDREPEER

Arabidopsis Description

ACS81-aminocyclopropane-1-carboxylate synthase-like protein [Source:UniProtKB/TrEMBL;Acc:Q56Y32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.